Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.4e-203 711.1 356 100.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.7e-197 691.8 356 96.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.4e-185 652.1 356 91.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-168 596.3 360 85.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.3e-150 535.4 354 76.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 9.6e-150 533.9 347 77.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 6.2e-149 531.2 354 76.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.2e-149 531.2 346 76.3
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.8e-148 529.6 346 76.3
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.4e-148 529.3 349 77.7
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 9.0e-148 527.3 354 75.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.2e-147 526.9 354 75.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.2e-147 526.9 354 76.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.6e-147 525.8 354 75.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.4e-147 525.0 346 76.9
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.9e-146 521.5 349 75.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.4e-146 520.8 351 73.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-145 520.4 347 74.6
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.9e-145 519.6 346 75.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.2e-145 518.5 348 75.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.2e-144 516.9 354 74.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.1e-144 516.2 354 74.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.5e-144 515.4 346 74.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 4.6e-144 515.0 321 78.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.0e-143 513.8 347 74.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.7e-143 513.1 347 73.8
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.0e-143 512.3 349 73.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 5.1e-143 511.5 346 74.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.6e-143 511.1 358 71.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 8.7e-143 510.8 347 74.6
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 8.7e-143 510.8 347 74.6
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-142 510.4 349 73.9
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 5.6e-142 508.1 345 74.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.6e-142 507.3 347 74.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.3e-141 506.9 350 72.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.6e-141 505.4 350 73.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.6e-141 505.4 364 72.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 6.2e-141 504.6 347 74.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 8.1e-141 504.2 358 70.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.1e-140 503.8 349 73.4
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.4e-140 502.7 409 65.5
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.4e-140 502.7 354 70.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.1e-140 502.3 326 76.7
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-139 500.4 346 73.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.2e-139 500.4 355 71.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.5e-139 500.0 319 77.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.6e-139 499.2 355 71.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.6e-139 497.7 347 71.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 7.6e-139 497.7 355 71.5
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.3e-138 496.9 355 71.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.9e-138 495.7 337 73.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.9e-138 495.0 332 75.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.2e-137 491.9 349 71.6
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 5.4e-137 491.5 384 67.4
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 5.4e-137 491.5 374 68.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-136 490.3 354 70.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.1e-136 489.6 342 72.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.5e-136 488.8 356 69.7
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-135 486.9 350 70.9
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-135 486.5 346 70.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 3.0e-135 485.7 353 69.7
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.9e-135 485.3 355 69.6
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 6.7e-135 484.6 347 69.7
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 8.7e-135 484.2 347 70.3
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.7e-135 484.2 349 69.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.7e-135 484.2 346 69.9
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.1e-134 483.8 341 72.7
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-134 483.0 353 68.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.3e-134 482.3 347 69.2
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.3e-134 481.9 306 78.4
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.6e-134 481.5 353 68.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.8e-133 478.4 355 68.5
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.1e-132 477.2 349 69.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-132 477.2 369 65.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.4e-132 476.9 334 72.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.4e-132 476.1 352 69.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.1e-132 475.7 347 68.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 4.0e-132 475.3 321 72.3
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.0e-132 475.3 320 73.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 5.3e-132 474.9 339 70.8
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-131 473.8 322 73.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 7.6e-131 471.1 346 69.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.2e-130 469.5 329 72.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.2e-130 469.5 358 67.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.8e-130 468.8 348 69.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-128 463.4 321 72.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.1e-128 463.0 355 65.9
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.7e-128 462.6 350 66.6
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.7e-128 462.6 321 72.3
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.5e-128 462.2 331 71.6
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.5e-128 462.2 330 71.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.6e-128 461.8 349 66.2
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 7.9e-128 461.1 350 67.1
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 7.9e-128 461.1 347 70.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 5.1e-127 458.4 350 66.3
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 6.7e-127 458.0 328 71.0
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 8.7e-127 457.6 318 71.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 8.7e-127 457.6 350 66.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.1e-126 457.2 350 66.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.1e-126 457.2 350 66.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.5e-126 456.8 321 71.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.5e-126 456.1 335 69.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 2.5e-126 456.1 353 65.4
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.5e-126 456.1 347 68.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.3e-126 455.7 332 71.7
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.3e-126 455.3 350 66.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 9.6e-126 454.1 355 65.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.8e-125 452.6 321 70.7
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.8e-125 452.6 340 68.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 3.7e-125 452.2 357 66.4
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.8e-125 451.8 358 63.1
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.2e-125 451.4 333 68.5
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.8e-124 449.9 354 63.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.5e-123 445.3 385 60.8
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-122 443.0 311 71.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.9e-122 442.6 321 68.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.5e-122 441.4 354 65.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.1e-121 440.7 320 68.1
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.5e-121 438.3 328 65.9
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.6e-120 435.3 311 70.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.9e-120 434.5 354 64.7
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.0e-119 434.1 326 67.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-119 433.3 269 78.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.9e-119 432.2 354 63.8
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 5.1e-119 431.8 348 64.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.2e-114 416.4 349 63.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.5e-113 412.9 527 45.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 4.2e-113 412.1 287 75.3
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.7e-112 409.5 268 75.7
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-110 404.1 278 75.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.1e-103 378.6 350 59.1
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.7e-93 347.1 230 73.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.4e-92 344.0 349 52.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.5e-91 339.0 324 53.4
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.1e-88 330.1 294 55.1
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.0e-87 325.9 276 63.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.2e-87 325.5 196 82.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.8e-87 325.1 229 71.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 4.8e-85 318.9 243 66.3
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 4.2e-81 305.8 233 67.0
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 9.4e-81 304.7 267 61.4
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 6.1e-80 302.0 199 75.9
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.4e-71 274.2 162 85.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.9e-69 265.8 189 72.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.3e-65 252.7 373 42.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.4e-60 235.7 188 64.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-58 228.4 208 57.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.5e-57 226.9 161 70.2
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.4e-55 221.1 158 68.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.8e-55 220.7 165 67.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.8e-51 205.3 329 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.3e-49 199.9 253 46.2
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-44 184.9 147 65.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.6e-43 181.0 197 51.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.8e-37 159.8 107 76.6
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.7e-27 127.1 258 34.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.6e-27 126.3 256 36.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 6.0e-27 125.9 335 33.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.0e-26 125.2 123 49.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-23 114.4 71 81.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.9e-22 108.6 206 36.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.7e-18 95.5 59 76.3
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 9.6e-17 92.0 91 54.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.8e-16 90.5 67 64.2
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.8e-16 90.5 55 83.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.8e-16 89.7 57 75.4
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.8e-10 71.2 80 45.0
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.7e-08 63.5 49 59.2


User provided reference genes

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