Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 0.0e+00 1647.1 846 100.0
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 0.0e+00 1536.5 848 90.3
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 0.0e+00 1306.6 858 76.3
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 0.0e+00 1162.1 794 73.3
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.9e-225 786.6 855 49.6
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.1e-223 779.2 851 48.6
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-218 764.2 852 48.7
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.5e-217 759.6 851 48.4
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 5.3e-215 751.9 863 49.2
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 6.9e-215 751.5 858 49.7
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.2e-213 746.5 853 47.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.9e-212 743.4 857 48.7
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 5.5e-212 741.9 856 48.0
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.3e-210 736.5 854 47.9
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.1e-210 735.3 870 48.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.2e-208 729.9 880 46.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.7e-208 729.2 858 47.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.2e-208 728.0 846 47.5
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.1e-207 726.1 858 47.3
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-206 724.2 856 47.8
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 2.6e-206 723.0 869 45.8
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 3.5e-206 722.6 847 47.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-205 720.7 856 47.7
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.0e-205 718.8 850 47.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 8.5e-205 718.0 856 47.8
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 4.2e-204 715.7 851 46.8
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 2.3e-202 709.9 857 46.0
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.7e-202 708.4 875 46.3
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.7e-200 702.6 855 46.9
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.2e-197 693.3 859 46.0
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.2e-197 693.3 859 46.0
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.9e-197 693.0 867 46.3
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 4.2e-196 689.1 857 44.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.6e-195 687.2 857 44.6
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.6e-195 687.2 875 44.5
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 2.1e-195 686.8 877 45.3
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.7e-195 686.4 891 44.9
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.0e-194 684.5 875 44.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.5e-193 680.6 878 45.3
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.3e-192 677.6 879 44.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 4.8e-192 675.6 884 44.7
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.1e-191 674.5 866 45.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 8.5e-189 664.8 866 45.5
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.0e-186 657.9 858 45.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 3.0e-186 656.4 875 43.5
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-185 654.4 901 41.8
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 2.6e-185 653.3 869 43.6
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 4.4e-185 652.5 871 44.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.8e-185 651.4 860 44.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.8e-184 649.8 883 44.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.8e-183 647.1 746 47.7
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.4e-183 646.7 864 47.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.2e-182 644.4 843 43.9
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.2e-182 644.4 868 43.5
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.6e-182 644.0 847 42.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.7e-182 643.3 910 43.0
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 2.7e-182 643.3 857 45.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.5e-182 642.5 843 42.6
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.9e-182 642.1 891 42.1
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 1.7e-181 640.6 871 43.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-181 640.2 737 48.8
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.3e-180 636.3 890 42.4
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.6e-179 634.0 875 43.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.6e-179 632.9 864 43.1
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 6.1e-179 632.1 848 43.9
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.2e-177 627.9 848 42.7
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 2.0e-177 627.1 869 42.9
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.4e-177 625.9 861 43.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 5.7e-177 625.5 845 41.7
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.5e-177 625.2 880 42.6
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.1e-175 621.3 845 42.7
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.1e-175 621.3 850 42.9
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.1e-175 621.3 850 42.9
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 3.2e-175 619.8 844 41.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.0e-174 617.1 838 42.8
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 1.0e-173 614.8 876 42.1
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.0e-173 613.2 855 42.9
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.5e-172 610.9 856 43.2
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.5e-172 610.1 838 41.8
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.5e-172 610.1 856 41.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 9.5e-172 608.2 918 41.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 6.2e-171 605.5 852 41.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.0e-170 604.7 948 39.9
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.0e-170 602.8 850 40.9
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 4.0e-170 602.8 844 42.2
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.0e-170 602.8 819 43.2
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 8.9e-170 601.7 876 41.4
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.6e-169 600.1 844 41.6
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.3e-168 597.8 846 41.8
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.3e-168 597.8 846 41.8
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.7e-168 597.4 844 40.5
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 3.7e-168 596.3 842 42.0
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 8.1e-163 578.6 737 45.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.5e-161 574.3 910 38.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 6.4e-160 568.9 852 39.6
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.9e-159 567.4 888 41.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.2e-151 540.0 737 42.3
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.7e-149 534.3 614 48.9
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.1e-149 532.7 849 38.4
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.5e-148 531.2 853 39.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.1e-147 527.3 809 40.0
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 6.2e-147 525.8 858 38.0
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 5.4e-143 512.7 873 36.3
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.9e-141 506.5 617 47.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 5.8e-137 492.7 601 46.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 4.9e-136 489.6 763 39.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.0e-134 482.6 700 40.7
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.3e-133 480.7 684 41.4
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.6e-124 449.5 632 41.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.8e-123 447.2 556 45.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.8e-123 447.2 664 41.3
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.2e-120 437.6 871 37.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 4.8e-115 419.9 689 37.7
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 8.2e-107 392.5 544 41.5
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.2e-99 365.9 551 40.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.8e-98 364.8 489 43.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 6.5e-96 356.3 575 40.9
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 5.5e-95 353.2 373 50.1
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 3.2e-87 327.4 655 34.4
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.4e-82 312.0 538 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.9e-80 304.3 963 27.2
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.1e-78 298.1 467 36.4
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 8.8e-77 292.7 306 51.3
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.4e-76 290.8 641 32.6
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 2.9e-72 277.7 1053 25.0
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.8e-72 277.3 321 47.4
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.3e-69 268.1 488 34.4
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 2.8e-67 261.2 458 37.3
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 6.8e-61 240.0 497 30.2
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.2e-51 208.4 339 39.8
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 6.4e-51 206.8 306 42.8
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.4e-51 206.8 202 53.0
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 4.0e-45 187.6 180 53.9
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 8.9e-45 186.4 175 54.9
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 5.4e-42 177.2 172 54.7
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 6.0e-41 173.7 256 40.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-40 171.8 192 50.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.6e-40 170.2 199 45.7
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 6.2e-38 163.7 154 57.1
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 3.1e-37 161.4 174 48.9
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 2.3e-32 145.2 169 58.6
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 7.3e-31 140.2 124 54.0
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 9.6e-31 139.8 281 31.7
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 4.7e-30 137.5 124 52.4
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 8.1e-30 136.7 116 56.9
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-29 136.0 111 57.7
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-29 136.0 98 64.3
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.8e-29 135.6 124 53.2
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 4.4e-28 131.0 197 39.6
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.2e-27 128.6 89 66.3
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.2e-27 128.6 275 31.3
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.1e-26 126.3 160 54.4
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.2e-25 122.9 144 46.5
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 2.1e-25 122.1 160 45.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 3.9e-24 117.9 127 48.8
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.6e-23 114.0 467 24.4
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-22 112.1 135 41.5
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 8.1e-22 110.2 246 28.0
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 5.8e-20 104.0 68 67.6
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 7.6e-20 103.6 134 53.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.9e-18 99.0 99 53.5
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 4.2e-18 97.8 134 42.5
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 7.1e-18 97.1 134 42.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-16 92.8 163 37.4
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 2.1e-14 85.5 81 45.7
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.0e-13 80.1 77 50.6
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.5e-12 77.8 63 58.7
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 4.2e-10 71.2 141 32.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.2e-09 69.7 58 58.6
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 7.9e-09 67.0 58 60.3
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 7.9e-09 67.0 183 28.4
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.1e-07 63.2 50 62.0
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 5.6e-07 60.8 239 25.9
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.3e-06 59.7 90 42.2
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 1.6e-06 59.3 52 53.8
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.2e-06 57.0 44 56.8


User provided reference genes

Program Settings