Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 9.5e-179 630.2 345 100.0
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 7.5e-176 620.5 345 98.6
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.8e-169 599.4 335 97.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.6e-160 568.9 342 90.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.5e-147 525.8 345 83.2
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 4.8e-146 521.5 346 83.5
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.2e-146 521.2 345 82.3
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.0e-145 518.5 344 82.3
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.7e-143 513.1 345 80.9
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 8.4e-143 510.8 337 81.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.9e-142 509.6 345 80.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.4e-142 509.2 345 80.9
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 5.5e-142 508.1 345 81.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.6e-141 506.5 345 80.6
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.7e-141 505.8 345 81.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-141 505.0 345 80.9
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-141 505.0 345 80.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.6e-141 505.0 345 78.3
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 6.0e-141 504.6 345 81.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.8e-140 503.1 345 80.6
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.0e-140 502.3 335 81.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 6.7e-140 501.1 345 79.7
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.5e-139 499.2 345 78.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 7.4e-139 497.7 345 78.6
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.3e-138 496.9 345 78.3
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.7e-138 495.4 335 80.3
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.1e-137 492.3 341 79.8
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 6.9e-137 491.1 347 78.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 9.0e-137 490.7 345 78.3
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.2e-136 490.3 341 79.2
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.0e-136 489.6 345 77.1
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.6e-136 489.2 345 77.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 4.5e-136 488.4 345 76.2
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.0e-135 487.3 370 73.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.9e-135 485.7 345 76.5
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.1e-134 483.8 340 77.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.4e-134 483.4 345 75.4
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.4e-134 483.4 345 76.2
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.6e-133 479.9 340 76.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.1e-133 479.6 345 75.1
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.0e-132 477.2 345 75.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.3e-131 472.2 345 75.1
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.7e-131 471.5 340 74.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 8.2e-130 467.6 345 74.5
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 8.2e-130 467.6 345 73.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 8.2e-130 467.6 345 74.8
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.8e-129 466.5 345 73.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.1e-129 465.7 345 73.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 73.3
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.2e-128 463.8 345 72.5
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 73.9
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.2e-127 459.5 345 74.2
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.3e-126 454.1 319 79.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.2e-125 453.8 345 73.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.7e-125 452.6 345 71.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.7e-125 452.6 345 72.2
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-124 450.3 345 72.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 8.7e-124 447.6 345 73.3
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.8e-121 439.9 341 71.8
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.6e-120 436.0 315 74.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.3e-119 433.7 341 71.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 5.0e-119 431.8 345 71.3
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.2e-118 427.9 345 69.9
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 4.6e-117 425.2 331 71.6
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 7.9e-117 424.5 345 68.1
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.8e-116 423.3 345 67.0
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.6e-115 419.5 345 69.6
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.3e-115 419.1 327 71.9
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 5.7e-115 418.3 319 71.8
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 9.7e-115 417.5 345 67.8
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.3e-114 414.8 345 67.5
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.4e-113 413.7 345 67.5
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.0e-112 409.8 289 75.4
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.0e-112 409.8 345 67.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.9e-111 406.0 346 67.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.8e-111 405.6 394 60.7
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 6.5e-111 404.8 345 67.8
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 6.5e-111 404.8 345 68.1
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.9e-110 403.3 337 66.5
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 2.5e-110 402.9 345 66.7
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.2e-110 401.4 345 67.8
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.2e-110 401.4 339 66.7
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.6e-109 400.2 346 66.2
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.7e-109 398.7 341 65.1
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.7e-109 398.7 345 66.1
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.1e-107 394.0 347 64.6
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 7.4e-107 391.3 289 72.7
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.8e-105 386.7 345 63.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.6e-104 382.9 345 64.1
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.6e-104 382.9 345 64.1
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.9e-102 376.7 345 63.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 9.4e-102 374.4 345 62.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 9.4e-102 374.4 325 63.1
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.0e-101 371.3 338 62.7
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.2e-100 368.6 287 69.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.2e-99 367.5 345 60.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.0e-99 366.7 345 61.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 3.3e-99 365.9 366 59.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 3.3e-99 365.9 324 62.7
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 7.5e-99 364.8 345 61.7
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.3e-98 364.0 345 63.8
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.2e-98 363.2 345 60.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-97 360.9 348 59.8
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.4e-97 359.8 373 58.4
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 4.1e-97 359.0 319 66.1
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.5e-96 355.5 343 60.9
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.0e-95 352.1 350 59.4
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 8.5e-95 351.3 345 62.0
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.5e-94 350.5 261 71.3
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.2e-93 347.4 349 59.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-93 347.4 348 58.9
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 3.7e-90 335.9 338 59.5
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.8e-89 333.6 295 64.1
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.5e-88 329.3 348 58.3
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-87 327.4 347 59.4
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-87 327.0 323 59.4
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.2e-87 326.6 324 59.3
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.9e-87 326.2 347 58.2
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.9e-87 326.2 347 58.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.9e-86 323.6 347 57.6
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 9.5e-86 321.2 325 60.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.2e-85 320.9 346 55.8
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-85 320.5 347 57.1
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 8.8e-84 314.7 346 55.8
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.7e-82 309.3 334 52.4
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.1e-81 306.2 346 54.6
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.6e-80 303.9 342 52.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.6e-80 303.9 345 53.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-79 301.2 346 54.6
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-78 297.7 303 60.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.5e-78 297.4 343 55.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 3.3e-78 296.2 341 55.1
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.3e-78 295.8 341 55.4
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.2e-77 294.3 317 57.7
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.9e-76 288.1 344 53.8
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.4e-75 286.2 345 51.9
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 4.9e-74 282.3 343 53.1
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-73 280.4 341 54.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 7.0e-73 278.5 263 62.0
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 9.2e-73 278.1 345 51.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-71 274.2 285 60.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.3e-70 269.2 339 50.7
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-69 267.7 228 66.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.8e-69 266.5 303 56.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 6.2e-69 265.4 284 58.5
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-67 261.2 296 55.4
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.7e-64 250.0 289 53.3
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 3.5e-64 249.6 355 41.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.0e-63 248.1 339 46.3
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.1e-60 238.0 292 51.4
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 4.4e-59 232.6 138 94.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 7.5e-59 231.9 356 46.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-57 227.6 343 46.6
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.7e-56 223.4 290 46.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.3e-55 220.3 350 45.4
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.4e-52 211.1 343 38.5
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 4.1e-49 199.5 239 52.3
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.7e-47 194.1 174 58.6
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.1e-45 187.2 245 51.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.8e-44 184.1 152 69.7
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.4e-42 175.3 313 44.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 8.4e-42 175.3 176 57.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.3e-41 171.8 172 61.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 5.4e-33 146.0 283 41.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.1e-32 144.1 321 38.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.4e-28 130.6 292 38.4
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.5e-27 127.9 145 55.9
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.5e-22 110.5 205 40.0
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.5e-22 110.5 205 40.0
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.4e-19 100.1 91 65.9
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.0e-15 88.6 91 60.4
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.8e-15 87.8 55 85.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 3.9e-15 86.7 54 85.2
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.9e-14 84.3 292 31.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 5.5e-09 66.2 96 49.0
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 2.1e-08 64.3 89 47.2


User provided reference genes

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