Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G003150 Cucumis sativus L. HOM05D001415 ORTHO05D001075 9.2e-22 105.9 51 100.0
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.3e-09 63.5 37 73.0
Duzib192G0302 Durio zibethinus HOM05D001415 ORTHO05D001075 2.0e-08 61.6 36 72.2
Thecc.06G132000 Theobroma cacao HOM05D001415 ORTHO05D001075 2.0e-08 61.6 36 72.2
Gohir.D10G050300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.4e-08 60.8 37 70.3
Gorai.011G053800 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.4e-08 60.8 37 70.3
Lalb_Chr04g0254011 Lupinus albus HOM05D001415 ORTHO05D001075 7.6e-08 59.7 36 69.4
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 7.6e-08 59.7 37 67.6
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 7.6e-08 59.7 44 65.9
BraA08t32195Z Brassica rapa HOM05D001415 ORTHO05D001075 9.9e-08 59.3 49 59.2
Gohir.A05G142400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.9e-08 59.3 33 72.7
Gorai.009G148600 Gossypium raimondii HOM05D001415 ORTHO05D001075 9.9e-08 59.3 33 72.7
Aa31LG8G1630 Aethionema arabicum HOM05D000146 ORTHO05D007947 1.3e-07 58.9 48 58.3
A08p01440 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-07 58.9 36 66.7
BolC3t21494H Brassica oleracea HOM05D001415 ORTHO05D001075 1.3e-07 58.9 49 59.2
Migut.D00904 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.3e-07 58.9 33 75.8
MD09G1171200 Malus domestica HOM05D001415 ORTHO05D001075 1.3e-07 58.9 44 65.9
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 1.3e-07 58.9 36 69.4
PGR119G2183 Punica granatum HOM05D001415 ORTHO05D001075 2.2e-07 58.2 34 70.6
COL.COLO4_30888 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.9e-07 57.8 45 62.2
Glyma.07G047000 Glycine max HOM05D001415 ORTHO05D001075 2.9e-07 57.8 34 70.6
Gohir.D05G144700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.9e-07 57.8 33 69.7
Lj1g0021078 Lotus japonicus HOM05D001415 ORTHO05D001075 2.9e-07 57.8 36 66.7
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-07 57.8 48 58.3
RcHm_v2.0_Chr2g0148241 Rosa chinensis HOM05D001415 ORTHO05D001075 2.9e-07 57.8 42 64.3
AL3G26700 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 3.8e-07 57.4 36 63.9
AT3G14362 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 3.8e-07 57.4 36 63.9
BolC5t33977H Brassica oleracea HOM05D001415 ORTHO05D001075 3.8e-07 57.4 36 63.9
Carub.0003s1407 Capsella rubella HOM05D001415 ORTHO05D001075 3.8e-07 57.4 36 63.9
CAN.G790.46 Capsicum annuum HOM05D001415 ORTHO05D001075 3.8e-07 57.4 41 63.4
Gohir.D06G147900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-07 57.4 36 66.7
Gorai.010G172400 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.8e-07 57.4 36 66.7
PGSC0003DMG400009157 Solanum tuberosum HOM05D001415 ORTHO05D001075 3.8e-07 57.4 41 63.4
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 6.4e-07 56.6 33 72.7
Glyma.16G015200 Glycine max HOM05D001415 ORTHO05D001075 6.4e-07 56.6 45 55.6
A03p38770 Brassica napus HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
A05p35030 Brassica napus HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
C05p52990 Brassica napus HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
BolC3t16958H Brassica oleracea HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
BraA03t13025Z Brassica rapa HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
BraA05t22317Z Brassica rapa HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
CARHR089420 Cardamine hirsuta HOM05D001415 ORTHO05D001075 8.4e-07 56.2 49 55.1
AL1G62400 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.1e-06 55.8 36 63.9
AT1G53708 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.1e-06 55.8 36 63.9
arahy.Tifrunner.gnm1.ann1.S2C0P1 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.1e-06 55.8 45 55.6
BolC6t36025H Brassica oleracea HOM05D001415 ORTHO05D001075 1.1e-06 55.8 36 63.9
BraA01t03976Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-06 55.8 49 55.1
Carub.0001s4298 Capsella rubella HOM05D001415 ORTHO05D001075 1.1e-06 55.8 36 63.9
CiPaw.01G210100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.1e-06 55.8 33 72.7
Medtr8g023610 Medicago truncatula HOM05D001415 ORTHO05D001075 1.1e-06 55.8 37 62.2
Phvul.009G260600 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.1e-06 55.8 33 69.7
Ca_23470_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 1.4e-06 55.5 36 61.1
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.4e-06 55.5 56 50.0
THA.LOC104810403 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 1.4e-06 55.5 49 51.0
Gohir.A06G142100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-06 55.1 35 65.7
Nn6g31497 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.9e-06 55.1 36 66.7
A01p39330 Brassica napus HOM05D001415 ORTHO05D001075 2.4e-06 54.7 49 53.1
CsaV3_7G033880 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.4e-06 54.7 46 58.7
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 3.2e-06 54.3 51 54.9
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 3.2e-06 54.3 48 52.1
TPR.G26464 Trifolium pratense HOM05D001415 ORTHO05D001075 3.2e-06 54.3 48 54.2
MELO3C024301.2 Cucumis melo HOM05D001415 ORTHO05D001075 4.2e-06 53.9 47 57.4
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 4.2e-06 53.9 48 52.1
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 5.4e-06 53.5 31 71.0
Aqoxy7G04200 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 7.1e-06 53.1 42 54.8
THA.LOC104822609 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 7.1e-06 53.1 49 51.0


User provided reference genes

Program Settings