Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G000880 Cucumis sativus L. HOM05D002087 ORTHO05D002101 2.8e-58 228.4 115 100.0
MELO3C017949.2 Cucumis melo HOM05D002087 ORTHO05D002101 1.1e-30 136.7 116 64.7
ClCG10G011030 Citrullus lanatus HOM05D002087 ORTHO05D002101 2.5e-22 109.0 113 59.3
Sed0008157 Sechium edule HOM05D002087 ORTHO05D002101 2.1e-13 79.3 106 42.5
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 1.0e-12 77.0 103 43.7
CiPaw.08G094400 Carya illinoinensis HOM05D002087 ORTHO05D002101 1.8e-12 76.3 106 42.5
Duzib211G0093 Durio zibethinus HOM05D002087 ORTHO05D002101 1.8e-12 76.3 105 41.9
Gohir.D08G086300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 8.8e-12 73.9 106 42.5
MELO3C015995.2 Cucumis melo HOM05D002087 ORTHO05D002101 1.1e-11 73.6 106 41.5
Gohir.A08G076800 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.1e-11 73.6 106 41.5
Gorai.004G090700 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.5e-11 73.2 106 42.5
Atru.chr5.1130 Acer truncatum HOM05D002087 ORTHO05D002101 2.5e-11 72.4 105 47.6
Rhsim01G0286200 Rhododendron simsii HOM05D002087 ORTHO05D002101 2.5e-11 72.4 104 40.4
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 3.3e-11 72.0 105 47.6
Gohir.A08G076700 Gossypium hirsutum HOM05D002087 ORTHO05D002101 3.3e-11 72.0 103 41.7
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 5.7e-11 71.2 103 45.6
Gohir.D08G138900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 5.7e-11 71.2 105 41.9
Gorai.004G142600 Gossypium raimondii HOM05D002087 ORTHO05D002101 5.7e-11 71.2 105 41.9
ClCG00G003750 Citrullus lanatus HOM05D002087 ORTHO05D002101 7.4e-11 70.9 88 46.6
ClCG10G011020 Citrullus lanatus HOM05D002087 ORTHO05D002101 7.4e-11 70.9 88 46.6
Duzib133G1126 Durio zibethinus HOM05D002087 ORTHO05D002101 7.4e-11 70.9 106 41.5
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 7.4e-11 70.9 103 43.7
Gorai.004G052200 Gossypium raimondii HOM05D002087 ORTHO05D002101 9.7e-11 70.5 98 41.8
Ciclev10023029m.g Citrus clementina HOM05D002087 ORTHO05D002101 1.3e-10 70.1 104 42.3
Duzib138G0723 Durio zibethinus HOM05D002087 ORTHO05D002101 1.7e-10 69.7 105 38.1
Gohir.D08G052100 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.7e-10 69.7 98 41.8
Gorai.004G090800 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.7e-10 69.7 106 39.6
Gohir.A08G117900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.2e-10 69.3 105 41.0
Nitab4.5_0002820g0100 Nicotiana tabacum HOM05D002087 ORTHO05D002101 2.2e-10 69.3 114 41.2
CsaV3_7G029330 Cucumis sativus L. HOM05D002087 ORTHO05D002101 2.8e-10 68.9 104 37.5
Gohir.A08G042300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.8e-10 68.9 98 40.8
SalBow3G0131 Salvia bowleyana HOM05D002087 ORTHO05D002101 3.7e-10 68.6 106 39.6
COL.COLO4_23330 Corchorus olitorius HOM05D002087 ORTHO05D002101 4.8e-10 68.2 107 42.1
Medtr7g108745 Medicago truncatula HOM05D002087 ORTHO05D002101 4.8e-10 68.2 102 42.2
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 4.8e-10 68.2 105 41.0
AT4G02380 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 6.3e-10 67.8 107 39.3
Medtr7g108735 Medicago truncatula HOM05D002087 ORTHO05D002101 6.3e-10 67.8 108 42.6
TAR365G0110 Trochodendron aralioides HOM05D002087 ORTHO05D002101 6.3e-10 67.8 107 41.1
TWI23G0703 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 8.2e-10 67.4 104 44.2
vmacro15151 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 8.2e-10 67.4 104 39.4
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 8.2e-10 67.4 106 38.7
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 1.1e-09 67.0 104 38.5
AL6G50740 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 1.4e-09 66.6 107 39.3
Eucgr.H01103 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.4e-09 66.6 106 38.7
Eucgr.K03492 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.4e-09 66.6 101 40.6
Phvul.007G218700 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.4e-09 66.6 111 39.6
VMungo0720G0684 Vigna mungo HOM05D002087 ORTHO05D002101 1.4e-09 66.6 108 41.7
Prupe.8G263100 Prunus persica HOM05D002087 ORTHO05D002101 1.8e-09 66.2 104 37.5
A09p01850 Brassica napus HOM05D002087 ORTHO05D002101 2.4e-09 65.9 110 39.1
CSS0043962 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.4e-09 65.9 104 37.5
Eucgr.H01104 Eucalyptus grandis HOM05D002087 ORTHO05D002101 2.4e-09 65.9 106 41.5
Sed0003613 Sechium edule HOM05D002087 ORTHO05D002101 2.4e-09 65.9 103 42.7
BcaNung04047 Brassica carinata HOM05D002087 ORTHO05D002101 3.1e-09 65.5 109 38.5
A03p31110 Brassica napus HOM05D002087 ORTHO05D002101 3.1e-09 65.5 107 40.2
C09p01890 Brassica napus HOM05D002087 ORTHO05D002101 3.1e-09 65.5 109 38.5
BolC9t53124H Brassica oleracea HOM05D002087 ORTHO05D002101 3.1e-09 65.5 109 38.5
BraA03t12288Z Brassica rapa HOM05D002087 ORTHO05D002101 3.1e-09 65.5 107 40.2
Gohir.D08G086400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 3.1e-09 65.5 103 38.8
Psat3g021600 Pisum sativum HOM05D002087 ORTHO05D002101 3.1e-09 65.5 116 44.0
Solyc06g009140.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 3.1e-09 65.5 110 39.1
CARHR250570 Cardamine hirsuta HOM05D002087 ORTHO05D002101 5.3e-09 64.7 107 39.3
Cpa.g.sc9.251 Carica papaya HOM05D002087 ORTHO05D002101 5.3e-09 64.7 104 41.3
BcaC01g06763 Brassica carinata HOM05D002087 ORTHO05D002101 6.9e-09 64.3 107 40.2
BolC3t16079H Brassica oleracea HOM05D002087 ORTHO05D002101 6.9e-09 64.3 107 40.2
Carub.0006s3478 Capsella rubella HOM05D002087 ORTHO05D002101 6.9e-09 64.3 107 38.3
Glyma.03G215000 Glycine max HOM05D002087 ORTHO05D002101 6.9e-09 64.3 113 42.5
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 6.9e-09 64.3 110 38.2
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 6.9e-09 64.3 111 43.2
BcaB01g02443 Brassica carinata HOM05D002087 ORTHO05D002101 9.1e-09 63.9 107 39.3
A10p01480 Brassica napus HOM05D002087 ORTHO05D002101 9.1e-09 63.9 107 39.3
Ca_09179_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 9.1e-09 63.9 108 38.0
Ca_30608_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 9.1e-09 63.9 108 38.0
BcaB01g02442 Brassica carinata HOM05D002087 ORTHO05D002101 1.2e-08 63.5 107 37.4
BcaC01g06764 Brassica carinata HOM05D002087 ORTHO05D002101 1.2e-08 63.5 107 37.4
TPR.G39792 Trifolium pratense HOM05D002087 ORTHO05D002101 1.2e-08 63.5 108 40.7
TPR.G9639 Trifolium pratense HOM05D002087 ORTHO05D002101 1.2e-08 63.5 108 40.7
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.2e-08 63.5 109 42.2
BcaB01g02052 Brassica carinata HOM05D002087 ORTHO05D002101 1.5e-08 63.2 107 40.2
CAN.G1280.5 Capsicum annuum HOM05D002087 ORTHO05D002101 1.5e-08 63.2 106 41.5
CAN.G1989.10 Capsicum annuum HOM05D002087 ORTHO05D002101 1.5e-08 63.2 106 41.5
CARHR002140 Cardamine hirsuta HOM05D002087 ORTHO05D002101 1.5e-08 63.2 107 34.6
Oeu010665.1 Olea europaea HOM05D002087 ORTHO05D002101 1.5e-08 63.2 104 39.4
Sopen06g003900 Solanum pennellii HOM05D002087 ORTHO05D002101 1.5e-08 63.2 110 38.2
BcaB05g23621 Brassica carinata HOM05D002087 ORTHO05D002101 2.0e-08 62.8 107 39.3
Glyma.19G211600 Glycine max HOM05D002087 ORTHO05D002101 2.0e-08 62.8 108 40.7
Lsat_1_v5_gn_9_5460 Lactuca sativa HOM05D002087 ORTHO05D002101 2.6e-08 62.4 106 36.8
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 2.6e-08 62.4 104 40.4
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 2.6e-08 62.4 109 40.4
AL1G12210 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 3.4e-08 62.0 107 36.4
Carub.0001s0193 Capsella rubella HOM05D002087 ORTHO05D002101 3.4e-08 62.0 107 35.5
Gorai.011G191500 Gossypium raimondii HOM05D002087 ORTHO05D002101 3.4e-08 62.0 107 40.2
Oeu048333.1 Olea europaea HOM05D002087 ORTHO05D002101 3.4e-08 62.0 106 39.6
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 3.4e-08 62.0 107 41.1
TPR.G33959 Trifolium pratense HOM05D002087 ORTHO05D002101 3.4e-08 62.0 108 38.9
MELO3C017950.2 Cucumis melo HOM05D002087 ORTHO05D002101 4.5e-08 61.6 90 46.7
CsaV3_4G000870 Cucumis sativus L. HOM05D002087 ORTHO05D002101 4.5e-08 61.6 88 43.2
Thhalv10029091m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 4.5e-08 61.6 107 36.4
Gohir.D10G171400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 4.5e-08 61.6 107 39.3
Nitab4.5_0004367g0080 Nicotiana tabacum HOM05D002087 ORTHO05D002101 4.5e-08 61.6 115 37.4
Phvul.001G207900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 4.5e-08 61.6 106 35.8
Sp6g02260 Schrenkiella parvula HOM05D002087 ORTHO05D002101 4.5e-08 61.6 107 37.4
Sed0009339 Sechium edule HOM05D002087 ORTHO05D002101 4.5e-08 61.6 89 42.7
CAN.G1989.9 Capsicum annuum HOM05D002087 ORTHO05D002101 5.9e-08 61.2 110 39.1
ClCG09G005640 Citrullus lanatus HOM05D002087 ORTHO05D002101 5.9e-08 61.2 105 35.2
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 5.9e-08 61.2 110 40.9
Eucgr.H01105 Eucalyptus grandis HOM05D002087 ORTHO05D002101 7.7e-08 60.8 101 36.6
Thhalv10009185m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 7.7e-08 60.8 107 36.4
Glyma.02G017100 Glycine max HOM05D002087 ORTHO05D002101 7.7e-08 60.8 108 38.9
MD03G1289900 Malus domestica HOM05D002087 ORTHO05D002101 7.7e-08 60.8 108 40.7
Psat6g164600 Pisum sativum HOM05D002087 ORTHO05D002101 7.7e-08 60.8 104 35.6
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 7.7e-08 60.8 111 38.7
C02p38880 Brassica napus HOM05D002087 ORTHO05D002101 1.0e-07 60.5 107 40.2
CAN.G1280.4 Capsicum annuum HOM05D002087 ORTHO05D002101 1.0e-07 60.5 110 34.5
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 1.0e-07 60.5 108 38.0
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 1.0e-07 60.5 111 37.8
BcaB03g15762 Brassica carinata HOM05D002087 ORTHO05D002101 1.3e-07 60.1 107 38.3
TWI59G1293 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.3e-07 60.1 92 41.3
Aqoxy2G02929 Aquilegia oxysepala HOM05D002087 ORTHO05D002101 1.7e-07 59.7 109 36.7
Hma1.2p1_0494F.1_g165250 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 1.7e-07 59.7 106 38.7
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.7e-07 59.7 103 40.8
A02p24640 Brassica napus HOM05D002087 ORTHO05D002101 2.2e-07 59.3 107 39.3
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 2.2e-07 59.3 113 40.7
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 2.2e-07 59.3 104 35.6
Aa31LG1G9760 Aethionema arabicum HOM05D002087 ORTHO05D002101 2.9e-07 58.9 96 39.6
TAR365G0362 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.9e-07 58.9 103 35.9
TAR365G1114 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.9e-07 58.9 103 35.9
Ah.08g213310 Amaranthus hybridus HOM05D002087 ORTHO05D002101 3.8e-07 58.5 86 40.7
Cc01_g20970 Coffea canephora HOM05D002087 ORTHO05D002101 3.8e-07 58.5 92 37.0
Sabra02G0155900 Salix brachista HOM05D002087 ORTHO05D002101 3.8e-07 58.5 106 39.6
PGSC0003DMG400017936 Solanum tuberosum HOM05D002087 ORTHO05D002101 3.8e-07 58.5 110 39.1
VMungo1383G1626 Vigna mungo HOM05D002087 ORTHO05D002101 3.8e-07 58.5 111 36.0
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 5.0e-07 58.2 106 37.7
Aa31LG5G2020 Aethionema arabicum HOM05D002087 ORTHO05D002101 5.0e-07 58.2 107 35.5
Duzib151G0120 Durio zibethinus HOM05D002087 ORTHO05D002101 5.0e-07 58.2 103 41.7
Gohir.A10G165300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 5.0e-07 58.2 106 37.7
Peaxi162Scf00140g01214 Petunia axillaris HOM05D002087 ORTHO05D002101 5.0e-07 58.2 90 44.4
Thecc.04G287100 Theobroma cacao HOM05D002087 ORTHO05D002101 5.0e-07 58.2 100 42.0
unitig_0.g670 Utricularia gibba HOM05D002087 ORTHO05D002101 5.0e-07 58.2 115 35.7
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 6.5e-07 57.8 107 38.3
Glyma.10G017600 Glycine max HOM05D002087 ORTHO05D002101 6.5e-07 57.8 108 36.1
Lsat_1_v5_gn_8_164161 Lactuca sativa HOM05D002087 ORTHO05D002101 6.5e-07 57.8 106 33.0
Oeu024406.1 Olea europaea HOM05D002087 ORTHO05D002101 6.5e-07 57.8 107 35.5
HanXRQChr04g0114131 Helianthus annuus HOM05D002087 ORTHO05D002101 8.5e-07 57.4 98 30.6
Manes.05G061300 Manihot esculenta HOM05D002087 ORTHO05D002101 8.5e-07 57.4 66 51.5
PSO170G6491 Papaver somniferum HOM05D002087 ORTHO05D002101 8.5e-07 57.4 52 48.1
Phvul.006G107900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 8.5e-07 57.4 108 38.0
TAR365G0861 Trochodendron aralioides HOM05D002087 ORTHO05D002101 8.5e-07 57.4 103 35.0
BcaC03g16117 Brassica carinata HOM05D002087 ORTHO05D002101 1.1e-06 57.0 107 38.3
BcaC05g24591 Brassica carinata HOM05D002087 ORTHO05D002101 1.1e-06 57.0 107 37.4
C05p01450 Brassica napus HOM05D002087 ORTHO05D002101 1.1e-06 57.0 107 37.4
BolC5t28927H Brassica oleracea HOM05D002087 ORTHO05D002101 1.1e-06 57.0 107 37.4
COL.COLO4_13835 Corchorus olitorius HOM05D002087 ORTHO05D002101 1.1e-06 57.0 104 41.3
ECA236G3158 Erigeron canadensis HOM05D002087 ORTHO05D002101 1.1e-06 57.0 105 33.3
Lsat_1_v5_gn_9_5440 Lactuca sativa HOM05D002087 ORTHO05D002101 1.4e-06 56.6 94 35.1
Lj1g0012830 Lotus japonicus HOM05D002087 ORTHO05D002101 1.4e-06 56.6 108 29.6
Potri.002G203500 Populus trichocarpa HOM05D002087 ORTHO05D002101 1.4e-06 56.6 90 40.0
Sp1g01800 Schrenkiella parvula HOM05D002087 ORTHO05D002101 1.4e-06 56.6 107 35.5
TAR365G0147 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.4e-06 56.6 106 35.8
HanXRQChr15g0465591 Helianthus annuus HOM05D002087 ORTHO05D002101 1.9e-06 56.2 81 37.0
QL06p009975 Quercus lobata HOM05D002087 ORTHO05D002101 1.9e-06 56.2 101 36.6
QL93p2007_0079 Quercus lobata HOM05D002087 ORTHO05D002101 1.9e-06 56.2 101 36.6
TWI73G0336 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.9e-06 56.2 106 34.9
arahy.Tifrunner.gnm1.ann1.06AKLM Arachis hypogaea HOM05D002087 ORTHO05D002101 2.5e-06 55.8 109 38.5
arahy.Tifrunner.gnm1.ann1.L9V8FT Arachis hypogaea HOM05D002087 ORTHO05D002101 2.5e-06 55.8 109 37.6
CSS0024122 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.5e-06 55.8 104 34.6
CSS0040472 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.5e-06 55.8 104 34.6
Glyma.03G253200 Glycine max HOM05D002087 ORTHO05D002101 2.5e-06 55.8 108 35.2
Manes.01G220400 Manihot esculenta HOM05D002087 ORTHO05D002101 2.5e-06 55.8 104 39.4
TWI09G0245 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 2.5e-06 55.8 103 34.0
Manes.05G061400 Manihot esculenta HOM05D002087 ORTHO05D002101 3.2e-06 55.5 69 49.3
Oeu024408.1 Olea europaea HOM05D002087 ORTHO05D002101 3.2e-06 55.5 108 35.2
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 4.2e-06 55.1 98 36.7
HanXRQChr15g0465601 Helianthus annuus HOM05D002087 ORTHO05D002101 4.2e-06 55.1 65 41.5
Lalb_Chr02g0146421 Lupinus albus HOM05D002087 ORTHO05D002101 4.2e-06 55.1 108 32.4
Sabra10G0007800 Salix brachista HOM05D002087 ORTHO05D002101 4.2e-06 55.1 94 34.0
TWI14G1194 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 4.2e-06 55.1 107 38.3
ECA247G2585 Erigeron canadensis HOM05D002087 ORTHO05D002101 7.2e-06 54.3 65 41.5
Medtr1g088230 Medicago truncatula HOM05D002087 ORTHO05D002101 7.2e-06 54.3 106 40.6
PGR003G0016 Punica granatum HOM05D002087 ORTHO05D002101 7.2e-06 54.3 105 39.0
PGR044G0391 Punica granatum HOM05D002087 ORTHO05D002101 7.2e-06 54.3 105 39.0
PGR119G0329 Punica granatum HOM05D002087 ORTHO05D002101 7.2e-06 54.3 107 36.4
Aqoxy204s003 Aquilegia oxysepala HOM05D002087 ORTHO05D002101 9.4e-06 53.9 63 42.9
EL10Ac7g17530 Beta vulgaris HOM05D002087 ORTHO05D002101 9.4e-06 53.9 106 34.9
Ca_10326_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 9.4e-06 53.9 99 36.4
Lsat_1_v5_gn_9_5400 Lactuca sativa HOM05D002087 ORTHO05D002101 9.4e-06 53.9 63 38.1
PSO407G0418 Papaver somniferum HOM05D002087 ORTHO05D002101 9.4e-06 53.9 73 41.1


User provided reference genes

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