Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.4e-83 312.0 147 100.0
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 2.1e-79 298.9 149 96.0
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 9.7e-64 246.9 146 81.5
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.4e-62 242.3 146 74.0
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 7.6e-61 237.3 146 75.3
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 5.0e-60 234.6 146 74.7
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 5.0e-60 234.6 146 75.3
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 6.5e-60 234.2 146 72.6
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.4e-59 233.0 149 71.8
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.5e-59 232.3 139 74.1
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.2e-58 229.9 148 71.6
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.1e-58 229.2 141 72.3
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 3.6e-58 228.4 147 72.8
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.3e-57 225.7 146 71.2
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.3e-57 225.7 143 72.0
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 3.0e-57 225.3 125 79.2
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 5.1e-57 224.6 142 73.2
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 6.7e-57 224.2 119 83.2
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 8.8e-57 223.8 146 71.2
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.8e-57 223.8 144 71.5
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.1e-56 223.4 120 79.2
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.5e-56 223.0 119 83.2
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.5e-56 223.0 146 71.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.5e-56 222.2 144 70.8
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 5.7e-56 221.1 146 69.2
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 7.4e-56 220.7 148 71.6
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 7.4e-56 220.7 148 70.9
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.3e-55 219.9 144 68.8
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.3e-55 219.9 148 72.3
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.3e-55 219.9 149 71.1
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.7e-55 219.5 144 68.8
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.7e-55 218.4 146 67.8
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.8e-55 218.0 144 69.4
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 6.3e-55 217.6 121 79.3
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 6.3e-55 217.6 146 69.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.8e-54 216.1 150 70.0
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.8e-54 216.1 139 67.6
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.4e-54 215.7 146 69.2
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 3.1e-54 215.3 139 68.3
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 3.1e-54 215.3 144 68.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 3.1e-54 215.3 144 68.1
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.1e-54 215.3 148 70.9
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 5.3e-54 214.5 123 75.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.3e-54 214.5 146 70.5
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 5.3e-54 214.5 146 68.5
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 6.9e-54 214.2 138 71.0
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 6.9e-54 214.2 123 75.6
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.2e-53 213.4 138 70.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 2.0e-53 212.6 144 68.1
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 3.4e-53 211.8 144 67.4
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 3.4e-53 211.8 117 79.5
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.5e-53 211.5 130 70.8
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 5.9e-53 211.1 142 66.2
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 7.7e-53 210.7 146 68.5
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.0e-52 210.3 138 70.3
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.3e-52 209.9 148 68.9
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.2e-52 209.1 146 64.4
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.2e-52 209.1 142 69.0
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.9e-52 208.8 138 70.3
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 2.9e-52 208.8 146 67.1
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 3.8e-52 208.4 146 67.1
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 5.0e-52 208.0 142 66.9
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 5.0e-52 208.0 148 66.9
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.4e-51 206.5 146 67.1
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.4e-51 206.5 146 66.4
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.4e-51 206.5 146 67.1
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-51 206.5 138 69.6
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.9e-51 206.1 139 66.2
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.5e-51 205.7 151 60.9
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 5.5e-51 204.5 139 66.2
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 5.5e-51 204.5 141 66.7
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 7.2e-51 204.1 146 63.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 9.4e-51 203.8 118 72.0
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 1.2e-50 203.4 142 65.5
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.6e-50 203.0 137 66.4
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.6e-50 203.0 146 65.1
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.1e-50 202.6 137 65.7
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.7e-50 202.2 127 70.1
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 7.9e-50 200.7 130 68.5
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 3.9e-49 198.4 146 61.6
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 3.9e-49 198.4 141 63.8
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 5.1e-49 198.0 140 62.9
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 8.8e-49 197.2 145 61.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.0e-48 196.1 141 63.8
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 2.6e-48 195.7 146 61.0
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-48 195.7 138 64.5
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 5.7e-48 194.5 149 62.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 7.4e-48 194.1 124 70.2
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 9.7e-48 193.7 146 63.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.3e-47 193.4 127 66.1
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.7e-47 193.0 145 61.4
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.4e-46 189.1 145 60.7
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.1e-46 188.7 123 65.0
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.1e-46 188.7 123 65.0
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 3.1e-46 188.7 164 54.3
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 9.1e-46 187.2 123 64.2
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.2e-45 186.8 133 59.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.0e-45 186.0 109 74.3
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.7e-44 183.0 140 64.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.9e-41 171.8 143 62.2
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.8e-36 155.2 83 80.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.1e-34 149.4 145 54.5
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.3e-33 146.0 116 54.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 4.4e-32 141.7 80 75.0
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 2.2e-31 139.4 147 53.7
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 3.7e-31 138.7 117 53.0
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.4e-30 136.0 82 72.0
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.5e-27 126.7 92 59.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.5e-27 125.9 92 58.7
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.2e-26 123.6 114 45.6
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.6e-26 123.2 96 54.2
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.4e-25 120.2 89 56.2
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 4.0e-25 118.6 76 67.1
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 4.4e-24 115.2 141 46.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-23 113.6 93 51.6
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.7e-23 113.2 78 64.1
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 4.1e-22 108.6 57 84.2
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 3.8e-20 102.1 91 52.7
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 5.0e-20 101.7 87 54.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.8e-18 95.9 99 43.4
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.8e-14 83.2 56 62.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 5.9e-13 78.2 67 53.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.2e-10 70.5 62 56.5
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 2.8e-10 69.3 65 47.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 6.1e-10 68.2 41 75.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 4.4e-08 62.0 39 69.2
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.9e-07 59.3 37 64.9
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 4.9e-07 58.5 63 36.5
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.4e-07 58.2 61 50.8
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 1.9e-06 56.6 63 34.9
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.9e-06 56.6 41 51.2
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 2.4e-06 56.2 88 38.6
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 2.4e-06 56.2 63 33.3
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 2.4e-06 56.2 63 34.9
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 2.4e-06 56.2 63 34.9
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 2.4e-06 56.2 63 34.9


User provided reference genes

Program Settings