Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.1e-121 439.9 208 100.0
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 4.3e-118 427.9 208 97.1
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 1.6e-104 382.9 206 88.8
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 1.3e-101 373.2 208 85.1
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 2.0e-91 339.3 208 78.8
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 2.6e-91 339.0 208 78.8
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 5.9e-91 337.8 208 77.9
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 2.1e-88 329.3 211 75.8
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.7e-88 328.9 208 77.4
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.7e-88 328.2 207 75.8
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 8.0e-88 327.4 208 76.4
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.0e-87 327.0 208 76.4
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.0e-87 325.5 208 74.5
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 3.9e-87 325.1 228 72.4
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.8e-87 323.9 206 75.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.1e-86 323.6 208 74.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-86 323.6 208 74.5
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.5e-86 323.2 205 75.6
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.0e-86 322.8 206 75.2
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 3.3e-86 322.0 208 73.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 3.3e-86 322.0 208 75.5
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 5.7e-86 321.2 208 76.0
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 7.4e-86 320.9 206 74.3
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 7.4e-86 320.9 202 77.2
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.7e-85 319.7 208 74.0
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 8.2e-85 317.4 165 93.3
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.4e-84 316.6 208 74.0
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 1.8e-84 316.2 208 72.6
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 9.1e-84 313.9 208 73.1
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.6e-83 313.2 208 73.6
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.6e-83 313.2 206 74.3
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 2.0e-83 312.8 212 70.8
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 4.5e-83 311.6 208 72.1
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.9e-83 311.2 208 72.1
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.0e-82 310.5 193 77.7
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.0e-82 310.5 208 72.6
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.3e-82 310.1 208 73.1
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.2e-82 309.3 208 73.1
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.9e-82 308.9 206 69.9
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 3.8e-82 308.5 203 74.4
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 5.0e-82 308.1 206 70.9
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.1e-81 307.0 211 70.1
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.5e-81 305.8 199 74.4
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 4.2e-81 305.1 212 67.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 5.5e-81 304.7 202 73.3
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 7.2e-81 304.3 209 71.8
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.2e-81 304.3 200 73.0
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 7.2e-81 304.3 200 73.0
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 9.4e-81 303.9 210 71.9
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 2.3e-79 299.3 209 69.9
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 5.2e-79 298.1 212 67.5
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 8.8e-79 297.4 200 71.5
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.0e-78 296.2 204 67.6
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.0e-78 296.2 208 67.3
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.6e-78 295.8 209 67.9
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.7e-78 294.7 211 65.9
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 5.7e-78 294.7 203 66.5
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 9.7e-78 293.9 208 66.8
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.3e-77 293.5 211 67.3
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.3e-77 293.5 192 74.0
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.7e-77 293.1 209 65.1
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.2e-77 292.7 208 67.8
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 2.2e-77 292.7 210 68.6
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.8e-77 292.4 201 68.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 4.8e-77 291.6 197 70.6
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 6.3e-77 291.2 211 65.9
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.1e-76 290.4 202 68.8
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.1e-76 290.4 210 64.8
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 1.1e-76 290.4 208 65.4
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.4e-76 289.3 202 67.8
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.4e-76 289.3 204 67.6
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 3.1e-76 288.9 202 68.3
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.0e-75 286.2 204 67.2
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 2.7e-75 285.8 208 66.3
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 4.5e-75 285.0 209 63.6
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 1.0e-74 283.9 210 65.2
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.0e-74 283.9 194 67.0
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.3e-74 283.5 199 68.8
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 6.5e-74 281.2 196 69.4
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 8.5e-74 280.8 193 71.0
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 8.5e-74 280.8 214 65.4
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.5e-73 280.0 204 66.7
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 3.2e-73 278.9 204 64.7
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 3.2e-73 278.9 184 71.2
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 4.2e-73 278.5 202 66.8
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 7.2e-73 277.7 199 67.8
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 1.2e-72 276.9 204 64.7
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 2.1e-72 276.2 204 64.7
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 2.7e-72 275.8 204 63.7
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 4.7e-72 275.0 205 62.4
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 8.0e-72 274.2 204 64.2
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 8.0e-72 274.2 200 62.0
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 1.4e-71 273.5 202 64.4
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.4e-71 273.5 205 63.4
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.4e-71 273.5 205 62.9
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 3.0e-71 272.3 281 52.3
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 6.8e-71 271.2 208 60.6
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 6.8e-71 271.2 208 60.6
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.2e-70 270.4 203 64.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 3.4e-70 268.9 195 66.7
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 3.4e-70 268.9 203 62.6
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 4.8e-69 265.0 200 64.0
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 4.8e-69 265.0 208 63.5
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 2.4e-68 262.7 188 66.5
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.4e-68 262.7 194 66.0
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.5e-67 258.8 200 60.0
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 7.7e-67 257.7 188 66.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 7.7e-67 257.7 188 66.0
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.1e-65 253.8 181 68.5
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.1e-65 253.8 280 50.4
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.0e-63 247.3 149 73.8
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.4e-63 246.9 220 59.5
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 6.8e-63 244.6 208 59.6
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.1e-60 237.3 209 57.9
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.4e-60 236.1 208 58.2
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.1e-60 235.7 165 70.3
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 5.4e-60 235.0 206 55.8
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.0e-59 233.0 181 62.4
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 4.5e-59 231.9 132 72.7
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.0e-58 230.7 290 45.9
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 3.8e-58 228.8 220 55.9
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.1e-56 221.5 190 58.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 8.0e-56 221.1 205 54.6
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 8.0e-56 221.1 191 55.5
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.5e-54 216.9 199 53.8
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 2.9e-53 212.6 207 51.7
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.1e-52 210.7 147 68.7
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 5.4e-52 208.4 210 49.0
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.3e-50 203.8 161 59.0
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.7e-50 203.4 189 57.1
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.1e-49 200.7 199 48.7
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 2.5e-49 199.5 148 66.9
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 3.3e-49 199.1 193 53.9
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 7.3e-49 198.0 159 63.5
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 9.5e-49 197.6 187 54.5
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 3.6e-48 195.7 108 74.1
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 3.6e-48 195.7 175 54.3
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 6.2e-48 194.9 194 48.5
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.3e-47 193.0 159 61.0
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 6.8e-47 191.4 192 51.0
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 4.4e-46 188.7 141 67.4
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 5.4e-44 181.8 202 44.6
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 6.0e-43 178.3 185 43.2
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 7.3e-41 171.4 140 60.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.2e-40 170.6 209 45.9
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 3.1e-39 166.0 200 47.0
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 3.1e-39 166.0 200 47.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 5.2e-39 165.2 209 45.5
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.2e-38 164.1 200 46.5
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 1.2e-38 164.1 202 39.1
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 9.9e-38 161.0 151 55.6
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 3.4e-30 136.0 185 41.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.3e-26 124.0 89 62.9
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.6e-24 117.1 88 60.2
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.1e-15 87.8 73 56.2
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 7.6e-14 81.6 162 28.4
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 9.9e-14 81.3 152 30.3
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 1.7e-13 80.5 158 29.1
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 2.2e-13 80.1 157 35.7
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 2.9e-13 79.7 160 28.1
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 2.9e-13 79.7 158 28.5
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 6.4e-13 78.6 151 29.1
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 8.4e-13 78.2 160 28.1
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 8.4e-13 78.2 163 27.0
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 7.1e-12 75.1 151 29.8
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 7.1e-12 75.1 160 29.4
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 1.6e-11 73.9 161 28.6
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.7e-11 73.2 55 50.9
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 6.0e-11 72.0 39 79.5
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 1.0e-10 71.2 158 28.5
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 3.9e-10 69.3 151 29.1
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 1.1e-09 67.8 161 26.7
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 2.5e-09 66.6 158 26.6
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 2.8e-08 63.2 106 34.0
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 6.2e-08 62.0 47 63.8


User provided reference genes

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