Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.2e-303 1043.1 524 100.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 6.5e-296 1020.0 524 97.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.4e-269 932.6 528 90.2
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.6e-268 928.3 529 89.0
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.4e-234 816.2 494 82.2
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.9e-234 815.8 509 79.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.2e-233 813.1 464 85.3
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.6e-233 812.8 494 81.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.5e-233 811.6 524 78.4
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.6e-233 811.2 525 77.3
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 7.8e-233 810.4 513 78.0
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.3e-232 808.9 460 85.0
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.1e-231 806.6 526 76.8
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.1e-231 806.6 535 75.1
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.9e-231 805.8 463 84.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 5.6e-231 804.3 466 83.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.6e-230 801.6 461 83.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 4.7e-230 801.2 460 85.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 6.2e-230 800.8 460 84.3
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 6.2e-230 800.8 476 82.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 8.1e-230 800.4 465 84.1
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-229 800.0 509 79.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.4e-229 799.7 519 76.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.4e-229 799.7 480 80.6
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.8e-229 799.3 468 84.0
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.8e-229 799.3 516 77.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.8e-229 799.3 496 79.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.3e-229 798.9 460 83.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.1e-229 798.5 517 75.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.0e-229 798.1 485 80.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.2e-229 797.7 527 75.9
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.2e-229 797.7 517 76.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.2e-228 796.6 527 75.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.0e-228 795.8 489 81.4
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.0e-228 795.8 460 83.0
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.6e-228 795.4 459 83.9
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 7.6e-228 793.9 483 80.3
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.9e-228 793.5 459 84.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.7e-227 792.7 490 79.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.7e-227 792.7 459 83.9
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.9e-227 792.0 518 75.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 3.8e-227 791.6 515 77.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.9e-227 791.2 518 75.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 6.4e-227 790.8 459 84.1
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.1e-226 790.0 467 82.0
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 3.2e-226 788.5 514 76.1
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 3.2e-226 788.5 521 75.2
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.7e-225 785.4 463 82.7
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.7e-225 785.4 462 81.6
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 3.5e-225 785.0 483 79.7
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 6.0e-225 784.3 535 73.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.0e-225 784.3 523 74.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.8e-225 783.9 462 82.5
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.8e-225 783.9 494 78.5
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.0e-224 783.5 525 74.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.0e-224 781.9 474 78.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 5.1e-224 781.2 463 81.6
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.5e-223 778.9 461 80.3
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.6e-223 777.7 519 75.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 7.3e-223 777.3 521 75.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 471 79.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.8e-222 775.4 555 71.0
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.6e-222 775.0 523 74.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 4.7e-222 774.6 520 74.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 4.7e-222 774.6 465 80.0
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.8e-221 772.7 483 77.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.4e-221 772.3 517 76.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.0e-221 771.5 482 77.8
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.0e-221 771.5 560 70.4
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.9e-221 770.8 461 80.3
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.5e-220 769.6 460 80.2
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.0e-220 769.2 482 77.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.6e-220 767.3 496 76.6
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.6e-220 767.3 539 72.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.3e-219 766.5 472 77.8
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.8e-219 765.0 462 80.1
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.9e-219 764.6 503 75.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 8.4e-219 763.8 487 76.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.1e-218 763.5 459 81.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.4e-218 763.1 459 79.1
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.7e-217 758.8 466 78.3
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.6e-217 758.1 457 80.5
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 7.8e-217 757.3 478 78.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 3.9e-216 755.0 464 78.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 5.1e-216 754.6 483 76.2
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.6e-216 754.2 461 78.7
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 8.7e-216 753.8 466 78.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.1e-215 753.4 464 78.4
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-215 753.4 483 76.2
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-215 752.7 483 76.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.5e-215 752.3 474 76.8
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.5e-215 752.3 484 76.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.3e-215 751.9 514 72.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 9.6e-215 750.4 475 76.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.8e-214 748.8 480 76.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.5e-212 743.0 511 72.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.8e-212 741.1 512 72.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.2e-211 739.2 537 69.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.2e-210 735.3 507 72.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 5.4e-210 734.6 485 74.6
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.3e-206 723.4 512 69.7
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.8e-206 722.2 498 71.3
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 6.2e-206 721.1 458 74.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 6.2e-206 721.1 469 74.8
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 8.4e-203 710.7 513 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.9e-202 709.5 464 73.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.8e-200 703.0 466 73.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.7e-200 700.7 421 79.6
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 4.0e-197 691.8 457 71.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 9.3e-194 680.6 456 74.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.8e-192 676.4 466 72.7
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 5.1e-192 674.9 462 74.9
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.6e-190 669.8 459 71.2
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 3.7e-190 668.7 442 77.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-189 667.2 382 85.3
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.4e-189 666.8 382 85.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.3e-189 664.8 433 74.6
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.6e-188 662.5 373 86.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 6.7e-184 647.9 373 83.4
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 4.1e-181 638.6 485 68.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.9e-179 632.5 453 69.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.9e-179 632.5 453 66.7
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 7.2e-178 627.9 378 82.8
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.8e-174 615.9 714 48.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-169 600.5 441 69.4
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.6e-169 600.1 462 67.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-166 590.5 453 66.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.1e-162 577.4 346 83.2
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.2e-152 542.0 403 71.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 8.6e-115 418.3 372 62.1
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.6e-113 414.1 313 68.7
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 9.9e-111 404.8 238 81.5
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 4.9e-102 375.9 292 65.8
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.5e-95 352.8 451 41.2
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.0e-91 340.1 252 70.2
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.1e-89 334.0 452 38.9
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.4e-86 322.0 200 78.0
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.6e-84 316.2 459 38.6
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 3.5e-76 290.0 225 64.9
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.3e-66 256.9 384 43.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.5e-61 240.7 135 86.7
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.3e-57 228.4 170 67.6
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.8e-56 224.6 138 76.8
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.2e-54 217.6 166 69.3
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.7e-52 210.7 202 55.9
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-43 182.2 133 62.4
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.3e-43 181.0 122 68.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.0e-43 180.6 375 31.2
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-42 177.9 253 43.9
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.0e-42 177.9 98 85.7
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.0e-39 167.9 122 67.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.1e-36 157.9 90 84.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.1e-32 144.1 125 56.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.7e-31 141.0 80 82.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-30 137.5 93 75.3
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.3e-29 134.0 290 31.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 8.0e-28 129.4 100 63.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.2e-26 125.6 100 63.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 7.5e-26 122.9 74 81.1
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.7e-15 87.8 56 66.1
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.8e-11 75.1 67 56.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 4.0e-11 73.9 47 72.3
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.5e-10 72.0 40 82.5
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.6e-10 71.2 59 62.7
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.7e-07 61.2 35 80.0
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.7e-07 61.2 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 6.6e-06 56.6 34 76.5


User provided reference genes

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