Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 4.2e-242 840.9 410 100.0
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.8e-217 758.4 409 90.7
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.0e-211 740.0 410 87.1
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.1e-188 662.5 410 79.8
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 3.1e-168 595.5 401 69.3
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.4e-167 592.0 408 68.6
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.9e-166 589.0 405 68.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 4.9e-166 588.2 408 67.4
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.4e-165 585.9 408 68.4
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 6.0e-164 581.3 403 68.7
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 6.0e-164 581.3 409 67.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.0e-163 580.5 402 69.2
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.8e-163 579.7 406 66.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.9e-163 578.6 404 66.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 5.1e-163 578.2 406 66.5
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 6.7e-163 577.8 402 67.9
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 8.7e-163 577.4 408 67.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-162 577.0 396 68.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.5e-162 576.6 408 67.4
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-162 576.6 396 68.4
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.9e-162 576.2 408 67.4
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.5e-162 575.9 408 67.2
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.5e-162 575.9 408 67.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.5e-162 575.9 396 68.4
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.3e-162 575.1 404 66.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 9.6e-162 573.9 402 66.9
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 9.6e-162 573.9 408 65.9
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-161 573.5 396 67.9
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 2.1e-161 572.8 395 68.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 3.7e-161 572.0 406 65.3
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-160 570.1 403 65.8
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.4e-160 569.3 404 67.3
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.1e-160 568.9 401 65.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.9e-160 567.8 406 65.5
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.5e-159 566.6 407 65.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 4.5e-159 565.1 409 65.0
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.5e-159 565.1 409 66.3
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.8e-159 564.7 402 66.9
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 7.6e-159 564.3 408 65.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 7.6e-159 564.3 406 64.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 7.6e-159 564.3 406 64.5
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 4.9e-158 561.6 400 65.5
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 6.5e-158 561.2 405 64.9
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.4e-158 560.8 409 64.5
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.4e-157 560.1 400 65.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.5e-157 559.3 408 64.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 5.5e-157 558.1 403 65.0
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 9.3e-157 557.4 400 66.2
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.1e-156 556.2 408 64.2
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.7e-156 555.8 399 63.2
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.5e-156 555.4 406 64.5
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.9e-156 554.3 403 63.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.3e-155 553.5 414 64.3
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.5e-154 550.1 406 63.3
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.9e-154 549.7 400 64.2
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.5e-154 549.3 406 64.8
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.5e-154 549.3 402 64.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 4.3e-154 548.5 395 66.6
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.7e-154 548.1 400 63.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.3e-153 547.0 406 64.3
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-153 546.6 415 62.4
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.6e-153 546.6 406 64.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.1e-153 546.2 400 64.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.1e-153 546.2 403 64.0
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 2.1e-153 546.2 390 65.1
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.8e-153 545.8 400 63.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.4e-152 543.5 407 63.4
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.2e-151 540.4 393 63.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.5e-151 540.0 393 63.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 2.6e-151 539.3 403 64.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 3.4e-151 538.9 417 60.4
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 4.5e-151 538.5 391 62.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 4.5e-151 538.5 400 60.8
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.5e-151 538.5 392 63.8
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.7e-150 536.6 406 60.6
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.8e-150 535.4 404 62.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 8.4e-150 534.3 407 60.9
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 8.4e-150 534.3 409 60.4
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 3.2e-149 532.3 407 60.7
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 2.7e-148 529.3 400 61.5
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.6e-148 528.5 407 63.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 4.6e-148 528.5 401 60.1
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.0e-147 527.3 389 64.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.3e-147 526.9 410 60.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.3e-147 526.9 413 60.0
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.8e-147 526.6 399 59.9
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-146 523.9 386 62.2
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.3e-146 521.9 388 62.1
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.7e-146 521.5 399 60.7
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.3e-145 520.4 392 61.7
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.6e-145 520.0 400 60.5
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.8e-145 519.2 399 60.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.7e-145 518.8 389 61.4
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.8e-145 518.5 402 60.0
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.1e-144 517.3 404 60.1
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 3.1e-144 515.8 416 59.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 4.1e-144 515.4 398 61.1
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 6.9e-144 514.6 406 59.4
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.5e-143 511.9 389 61.2
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.5e-143 511.9 395 60.0
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.9e-142 509.2 395 59.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 8.5e-142 507.7 385 60.8
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.9e-141 506.5 389 59.9
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-141 506.5 416 58.2
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.0e-139 499.2 394 58.6
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 8.8e-139 497.7 396 58.3
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.1e-138 497.3 385 60.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.1e-138 497.3 385 60.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-137 493.8 379 60.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-137 493.8 379 60.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.3e-137 493.8 399 57.6
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-136 490.7 388 59.0
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.4e-136 489.6 398 61.6
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 4.1e-136 488.8 399 57.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.9e-136 488.0 391 57.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-133 480.7 392 55.9
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.8e-129 466.1 408 56.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.0e-126 457.6 409 54.0
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.6e-124 449.1 392 54.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.8e-123 446.8 385 54.5
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.9e-117 426.8 401 53.6
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.2e-117 424.9 409 48.7
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.2e-116 424.1 402 51.7
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.2e-113 413.3 406 49.0
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 7.0e-112 408.3 398 52.3
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-111 406.8 399 52.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.5e-110 401.7 375 52.8
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 5.4e-104 382.1 413 46.7
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.3e-102 377.5 391 50.1
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 4.2e-101 372.5 406 49.0
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 5.5e-101 372.1 410 45.9
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 6.1e-100 368.6 412 44.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.6e-94 348.2 408 48.0
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 9.5e-93 344.7 397 45.1
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-83 314.7 255 56.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.0e-83 312.8 408 42.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 2.1e-79 300.4 395 41.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.7e-78 297.4 410 41.0
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.0e-78 296.6 400 42.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.9e-77 293.9 406 40.9
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.3e-70 271.2 402 40.3
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-63 248.1 229 54.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.9e-61 240.7 187 58.3
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 4.4e-58 229.6 158 65.2
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.1e-55 220.7 432 31.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 8.1e-44 182.2 157 54.8
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 5.3e-35 152.9 115 64.3
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-33 147.5 389 27.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.3e-29 133.3 321 29.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.4e-27 127.5 98 63.3
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 4.5e-26 123.2 405 28.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 6.5e-25 119.4 81 65.4
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.0e-09 68.9 40 80.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.8e-09 67.0 48 58.3
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 6.5e-09 66.2 412 26.5
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 2.5e-08 64.3 411 25.5
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 7.2e-08 62.8 423 25.1
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 3.6e-07 60.5 405 24.0
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 8.0e-07 59.3 404 24.5
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.4e-06 58.5 72 50.0
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.8e-06 58.2 409 24.7
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 3.0e-06 57.4 418 25.1
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 4.0e-06 57.0 60 43.3
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 8.8e-06 55.8 406 25.1


User provided reference genes

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