Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 3.8e-236 821.2 449 100.0
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 1.0e-220 770.0 449 90.9
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 3.1e-214 748.4 446 88.1
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.7e-188 662.9 444 78.2
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 1.1e-142 510.8 376 70.5
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 1.9e-139 500.0 379 68.9
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.3e-138 497.3 373 70.2
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 1.1e-137 494.2 367 69.2
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 1.8e-137 493.4 403 66.7
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.1e-137 492.7 375 68.8
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 3.8e-135 485.7 362 69.3
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 4.9e-135 485.3 363 69.1
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 6.4e-135 485.0 363 69.1
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 2.7e-133 479.6 367 68.4
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 1.3e-132 477.2 371 67.9
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 3.0e-132 476.1 369 66.7
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.7e-130 469.2 366 66.4
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 6.2e-130 468.4 371 65.2
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 1.4e-129 467.2 372 66.1
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 2.4e-129 466.5 376 67.0
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 6.9e-129 464.9 371 65.5
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.5e-128 463.8 377 65.5
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 4.5e-128 462.2 376 65.4
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 4.5e-128 462.2 374 65.2
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 4.9e-127 458.8 371 63.9
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 1.1e-126 457.6 342 69.9
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 1.9e-126 456.8 377 62.9
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 7.1e-126 454.9 378 64.8
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 2.1e-125 453.4 375 65.3
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 2.1e-125 453.4 378 64.8
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 2.1e-125 453.4 372 64.0
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 2.7e-125 453.0 342 67.8
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 6.0e-125 451.8 371 65.0
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 6.0e-125 451.8 369 64.2
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 1.0e-124 451.1 372 65.3
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 1.0e-124 451.1 378 63.2
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 1.8e-124 450.3 371 64.2
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 3.0e-124 449.5 382 63.4
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 5.1e-124 448.7 344 68.0
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 5.1e-124 448.7 420 59.3
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 6.7e-124 448.4 358 64.2
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 6.7e-124 448.4 363 64.7
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 6.7e-124 448.4 373 64.1
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 8.7e-124 448.0 376 63.3
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 8.7e-124 448.0 376 63.3
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 2.5e-123 446.4 369 64.5
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 3.3e-123 446.0 339 66.1
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 5.6e-123 445.3 370 64.3
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 7.4e-123 444.9 339 66.1
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 9.6e-123 444.5 441 56.7
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 1.3e-122 444.1 365 63.3
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 2.8e-122 443.0 373 63.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.7e-122 442.6 369 64.5
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 8.2e-122 441.4 380 61.3
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.1e-121 441.0 370 64.3
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.1e-121 441.0 372 62.9
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 1.1e-121 441.0 367 62.4
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 1.4e-121 440.7 342 66.4
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 3.1e-121 439.5 306 72.2
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 5.3e-121 438.7 372 63.4
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 5.3e-121 438.7 367 62.9
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 3.4e-120 436.0 374 64.7
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 5.8e-120 435.3 364 62.4
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 7.6e-120 434.9 363 63.9
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 1.7e-119 433.7 341 65.7
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 2.2e-119 433.3 348 65.8
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 2.2e-119 433.3 348 65.8
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 2.9e-119 433.0 378 62.4
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 6.5e-119 431.8 376 64.6
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.1e-118 431.0 366 63.1
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 2.5e-118 429.9 381 60.9
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 2.5e-118 429.9 365 61.4
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 3.2e-118 429.5 378 61.9
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 4.2e-118 429.1 354 64.4
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 4.2e-118 429.1 340 65.9
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 7.1e-118 428.3 378 61.6
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 9.3e-118 427.9 363 61.4
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 7.9e-117 424.9 341 64.8
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 1.0e-116 424.5 334 65.9
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.8e-116 423.7 440 59.3
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 3.0e-116 422.9 379 60.7
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 5.1e-116 422.2 381 59.3
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 1.5e-115 420.6 329 65.7
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.5e-115 419.9 378 61.1
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 1.6e-114 417.2 369 61.0
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 3.7e-114 416.0 379 60.2
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 4.8e-114 415.6 342 64.0
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 8.2e-114 414.8 340 64.7
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 2.6e-112 409.8 337 63.2
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 1.9e-110 403.7 364 58.8
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 6.3e-106 388.7 363 60.9
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 6.7e-100 368.6 295 64.7
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 1.4e-92 344.4 370 53.8
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 5.2e-92 342.4 239 74.1
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 2.2e-87 327.0 358 54.5
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 8.5e-87 325.1 262 64.5
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.5e-83 314.3 396 46.0
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 1.3e-82 311.2 340 54.1
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 2.0e-80 303.9 361 49.0
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.7e-77 293.5 211 72.0
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 7.7e-72 275.4 209 69.9
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 4.2e-70 269.6 201 68.7
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 3.4e-67 260.0 337 46.6
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 2.8e-66 256.9 337 45.4
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 9.2e-65 251.9 335 42.4
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 8.3e-58 228.8 339 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.6e-53 214.5 225 51.6
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 9.2e-41 172.2 172 55.2
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 3.1e-36 157.1 176 51.7
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 5.1e-31 139.8 244 36.5
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 1.1e-30 138.7 103 69.9
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 3.9e-23 113.6 338 29.0
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.6e-19 100.9 93 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 2.9e-18 97.4 112 49.1
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 4.9e-18 96.7 102 52.0
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-17 95.5 204 31.9
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 1.1e-17 95.5 342 27.5
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 2.7e-16 90.9 110 48.2
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 2.6e-11 74.3 125 40.0
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 6.7e-07 59.7 36 69.4


User provided reference genes

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