Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 5.1e-148 528.1 345 100.0
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 1.4e-134 483.4 345 89.9
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 1.1e-113 414.1 362 78.7
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 4.1e-97 359.0 345 75.7
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 2.3e-71 273.5 340 53.8
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 5.6e-70 268.9 334 59.0
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 2.3e-68 263.5 273 63.0
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 3.4e-67 259.6 269 56.9
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 7.5e-67 258.5 266 60.5
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.1e-65 254.6 263 61.2
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 1.2e-64 251.1 269 59.5
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.6e-64 250.8 275 62.2
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 6.0e-64 248.8 269 58.7
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 7.8e-64 248.4 275 66.2
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 1.0e-63 248.1 332 63.3
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 1.3e-63 247.7 317 56.2
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 3.0e-63 246.5 308 62.0
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 3.0e-63 246.5 266 64.3
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 5.0e-63 245.7 265 60.4
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 8.6e-63 245.0 262 57.6
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 2.5e-62 243.4 279 62.0
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 2.5e-62 243.4 279 62.0
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 3.3e-62 243.0 271 66.1
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.3e-62 243.0 274 64.2
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 4.3e-62 242.7 269 59.9
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 5.6e-62 242.3 267 58.8
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 9.5e-62 241.5 269 60.6
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 9.5e-62 241.5 331 53.8
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 1.6e-61 240.7 293 49.8
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 2.1e-61 240.4 267 59.9
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 2.8e-61 240.0 280 66.1
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 4.7e-61 239.2 268 55.2
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.1e-60 238.0 274 60.2
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 1.1e-60 238.0 331 58.3
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 2.3e-60 236.9 265 53.2
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 4.0e-60 236.1 268 56.0
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 8.9e-60 235.0 265 53.2
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 8.9e-60 235.0 291 60.8
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 8.9e-60 235.0 333 50.5
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 1.2e-59 234.6 281 52.7
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 1.2e-59 234.6 267 53.2
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 2.0e-59 233.8 269 51.7
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 3.4e-59 233.0 266 54.5
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 4.4e-59 232.6 281 56.2
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 7.5e-59 231.9 293 57.7
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 9.9e-59 231.5 306 48.4
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 4.9e-58 229.2 257 52.9
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 8.3e-58 228.4 281 55.2
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 8.3e-58 228.4 263 61.2
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 8.3e-58 228.4 292 60.3
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 1.4e-57 227.6 343 49.3
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 5.4e-57 225.7 312 48.7
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 7.1e-57 225.3 266 51.1
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 9.2e-57 224.9 256 51.6
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 9.2e-57 224.9 270 56.3
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 1.2e-56 224.6 275 54.9
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.2e-56 224.6 259 61.4
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 2.1e-56 223.8 258 57.8
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 2.1e-56 223.8 261 62.1
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 2.7e-56 223.4 268 52.6
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 6.0e-56 222.2 269 57.2
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 6.0e-56 222.2 265 56.6
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.3e-55 221.1 276 54.7
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 1.7e-55 220.7 259 62.9
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 1.7e-55 220.7 274 54.7
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 2.3e-55 220.3 255 59.2
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 3.0e-55 219.9 301 47.2
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 6.6e-55 218.8 256 59.4
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 6.6e-55 218.8 266 59.4
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 8.6e-55 218.4 265 50.2
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 1.1e-54 218.0 261 51.3
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 1.1e-54 218.0 254 57.9
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 2.5e-54 216.9 267 57.3
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 3.3e-54 216.5 257 59.9
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 5.6e-54 215.7 269 54.3
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 9.5e-54 214.9 263 56.3
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 1.2e-53 214.5 262 61.1
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 1.2e-53 214.5 278 49.6
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 2.8e-53 213.4 256 58.2
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 2.8e-53 213.4 250 60.0
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 2.8e-53 213.4 249 58.6
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 2.8e-53 213.4 266 56.0
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 8.1e-53 211.8 263 55.1
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 1.1e-52 211.5 247 55.9
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 1.8e-52 210.7 352 45.7
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.8e-52 210.7 253 66.8
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 5.2e-52 209.1 181 65.7
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 6.8e-52 208.8 308 49.7
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 1.3e-50 204.5 255 52.5
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 2.2e-50 203.8 263 47.5
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 2.4e-49 200.3 223 56.5
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 7.1e-49 198.7 176 59.1
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.2e-48 198.0 270 48.1
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 1.0e-47 194.9 250 51.6
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 1.1e-44 184.9 150 64.7
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 5.8e-43 179.1 148 63.5
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.2e-42 177.2 161 64.0
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 4.9e-42 176.0 307 53.1
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 1.3e-39 167.9 223 57.4
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 1.3e-39 167.9 270 50.7
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 8.7e-39 165.2 147 63.9
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 7.9e-32 142.1 121 62.8
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 2.6e-27 127.1 251 35.9
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.8e-23 114.4 270 35.2
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 3.9e-23 113.2 271 39.1
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 6.9e-20 102.4 113 50.4
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 1.6e-16 91.3 117 47.0
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 1.9e-14 84.3 241 34.9
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 4.8e-13 79.7 56 69.6
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.7e-10 71.2 185 35.1
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 6.5e-10 69.3 56 50.0
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 2.5e-09 67.4 47 59.6
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 3.6e-08 63.5 85 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 7.9e-08 62.4 139 34.5
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 1.4e-07 61.6 102 57.8


User provided reference genes

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