Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.6e-119 431.0 228 100.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.9e-80 302.0 290 63.8
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 9.0e-77 290.8 256 62.9
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.7e-22 109.4 219 30.1
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 4.9e-22 109.0 190 35.3
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.1e-21 105.9 210 31.0
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 4.3e-18 95.9 200 28.5
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.3e-18 95.9 198 29.8
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.8e-17 93.2 219 30.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 4.7e-17 92.4 213 30.0
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 6.2e-17 92.0 203 30.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.2e-17 92.0 213 30.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 8.1e-17 91.7 227 30.0
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 8.1e-17 91.7 203 30.0
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 5.2e-16 89.0 197 28.9
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.2e-16 89.0 198 29.3
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 5.2e-16 89.0 193 30.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 6.8e-16 88.6 180 29.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 6.8e-16 88.6 198 30.3
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-15 87.8 198 28.3
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-15 87.8 200 28.5
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-15 87.8 200 28.5
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.2e-15 87.8 192 29.2
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.5e-15 87.4 198 28.3
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.5e-15 87.4 199 29.6
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.6e-15 86.7 196 28.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 2.6e-15 86.7 198 27.8
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 2.6e-15 86.7 197 28.9
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.6e-15 86.7 192 28.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.6e-15 86.7 206 29.1
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 3.4e-15 86.3 192 29.7
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 3.4e-15 86.3 222 32.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 4.4e-15 85.9 198 27.8
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 4.4e-15 85.9 198 27.8
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.8e-15 85.5 166 30.7
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.8e-15 85.5 192 28.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 7.5e-15 85.1 194 29.9
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 7.5e-15 85.1 220 29.5
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 9.8e-15 84.7 196 28.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 9.8e-15 84.7 195 28.7
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-14 84.0 214 28.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.7e-14 84.0 211 28.0
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.7e-14 84.0 225 29.8
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-14 84.0 215 28.4
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.2e-14 83.6 205 27.8
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-14 83.6 195 27.2
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 3.7e-14 82.8 214 28.5
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.7e-14 82.8 197 28.4
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.7e-14 82.8 192 28.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-13 81.3 197 28.4
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.1e-13 81.3 192 27.1
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.1e-13 81.3 193 26.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.1e-13 81.3 205 26.8
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.4e-13 80.9 214 28.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.4e-13 80.9 194 27.8
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.4e-13 80.9 229 27.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.4e-13 80.9 211 28.4
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.4e-13 80.1 221 26.2
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 3.2e-13 79.7 196 27.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 5.4e-13 79.0 180 28.9
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 5.4e-13 79.0 202 27.7
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.1e-13 78.6 192 27.6
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 7.1e-13 78.6 206 27.2
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.2e-13 78.2 222 28.4
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-12 77.8 192 27.1
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-12 77.8 192 27.1
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.2e-12 77.8 200 28.0
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.2e-12 77.8 194 27.8
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.1e-12 77.0 214 27.1
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.7e-12 76.6 192 27.1
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.7e-12 76.6 195 26.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.7e-12 76.6 197 29.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 3.5e-12 76.3 189 27.0
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.5e-12 76.3 156 30.1
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 3.5e-12 76.3 192 26.6
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.5e-12 76.3 192 27.1
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 3.5e-12 76.3 193 28.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.5e-12 76.3 199 27.1
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 3.5e-12 76.3 196 26.5
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 3.5e-12 76.3 196 26.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 4.6e-12 75.9 192 27.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.6e-12 75.9 202 27.2
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.6e-12 75.9 199 25.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.0e-12 75.5 215 26.5
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.0e-12 75.5 215 26.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 7.8e-12 75.1 190 29.5
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.8e-12 75.1 202 26.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 7.8e-12 75.1 193 25.9
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.0e-11 74.7 213 27.7
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.0e-11 74.7 202 27.7
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.0e-11 74.7 199 27.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.7e-11 73.9 152 32.2
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.7e-11 73.9 138 33.3
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.3e-11 73.6 254 22.4
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.0e-11 73.2 197 23.9
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.1e-11 72.4 199 26.6
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 8.6e-11 71.6 185 26.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-10 71.2 192 25.5
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.5e-10 70.9 193 25.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.5e-10 70.9 218 28.4
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.5e-10 70.9 192 25.5
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.3e-10 69.3 147 28.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.6e-10 68.9 195 28.7
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 5.6e-10 68.9 186 27.4
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 5.6e-10 68.9 189 26.5
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 7.3e-10 68.6 217 28.1
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.2e-09 67.8 189 25.9
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.2e-09 67.8 186 25.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.2e-09 67.8 114 32.5
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-09 67.0 176 25.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.8e-09 66.6 189 25.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.8e-09 66.6 181 28.7
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.6e-09 66.2 186 25.8
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.4e-08 64.3 123 30.9
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.8e-08 63.9 186 25.3
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.8e-08 63.9 114 29.8
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.8e-08 63.9 144 27.8
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.0e-08 62.8 181 26.0
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 5.2e-08 62.4 203 26.6
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.5e-07 60.8 68 45.6
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.0e-07 60.5 197 25.4
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 3.4e-07 59.7 159 31.4
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 3.4e-07 59.7 127 29.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 3.4e-07 59.7 137 28.5
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.4e-07 59.7 204 27.9
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 4.4e-07 59.3 181 24.9
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 5.8e-07 58.9 192 23.4
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 7.6e-07 58.5 63 44.4
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 7.6e-07 58.5 185 22.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 9.9e-07 58.2 200 25.5
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.2e-06 57.0 135 30.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.7e-06 56.2 85 36.5
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.9e-06 55.8 203 21.7
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.9e-06 55.8 198 22.7
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 6.4e-06 55.5 183 25.1
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 8.4e-06 55.1 163 28.8


User provided reference genes

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