Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 5.0e-300 1033.9 601 100.0
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 3.2e-222 775.4 722 70.4
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 4.9e-207 724.9 745 66.6
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 2.1e-205 719.5 601 76.5
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 6.2e-125 452.2 592 51.7
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 1.1e-124 451.4 519 55.9
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 6.8e-124 448.7 525 57.7
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 8.9e-124 448.4 568 58.3
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 1.5e-123 447.6 493 57.0
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 4.4e-123 446.0 506 55.7
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 1.4e-121 441.0 515 53.6
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 3.2e-121 439.9 517 54.9
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 1.2e-120 438.0 508 52.0
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 1.2e-120 438.0 497 56.3
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 8.7e-119 431.8 569 52.5
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 8.7e-119 431.8 555 53.5
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 2.5e-118 430.3 569 52.9
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 7.3e-118 428.7 540 55.9
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 9.6e-118 428.3 516 55.8
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 1.6e-117 427.6 513 56.9
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 2.1e-117 427.2 510 54.5
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 2.1e-117 427.2 510 55.9
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 5.2e-116 422.5 571 53.8
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 1.2e-115 421.4 543 51.6
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 1.2e-115 421.4 495 56.2
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 2.0e-115 420.6 551 55.7
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 4.4e-115 419.5 512 52.7
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 2.2e-114 417.2 506 54.9
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 6.4e-114 415.6 514 55.3
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 1.1e-113 414.8 526 52.7
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 1.9e-113 414.1 574 51.9
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 2.4e-113 413.7 513 53.4
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 3.2e-113 413.3 511 54.0
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 5.4e-113 412.5 627 49.4
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 5.4e-113 412.5 508 54.9
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 3.5e-112 409.8 491 55.8
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 1.0e-111 408.3 542 52.8
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 2.3e-111 407.1 511 53.2
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 3.0e-111 406.8 511 53.8
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 3.9e-111 406.4 517 56.1
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 6.6e-111 405.6 523 53.2
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 1.3e-109 401.4 513 51.5
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 2.8e-109 400.2 596 47.0
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.8e-109 399.4 500 55.8
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 4.8e-109 399.4 508 52.8
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 1.1e-108 398.3 576 49.0
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 1.4e-108 397.9 536 52.2
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 1.4e-108 397.9 489 54.8
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 1.8e-108 397.5 509 53.2
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 4.0e-108 396.4 519 52.6
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 4.0e-108 396.4 490 54.1
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 5.3e-108 396.0 489 54.2
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.2e-107 394.8 495 55.8
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 1.2e-107 394.8 501 54.3
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 3.4e-107 393.3 508 52.0
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 5.8e-107 392.5 504 52.6
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 2.9e-106 390.2 513 52.2
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 3.8e-106 389.8 516 51.9
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 6.4e-106 389.0 497 52.7
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 3.2e-105 386.7 500 53.0
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 1.0e-103 381.7 495 55.2
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 2.3e-103 380.6 499 53.1
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 3.0e-103 380.2 564 45.0
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 5.6e-102 375.9 496 52.6
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 2.1e-101 374.0 544 49.6
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 8.1e-101 372.1 515 50.5
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 1.4e-100 371.3 615 41.5
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.8e-100 370.9 506 50.0
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 5.8e-99 365.9 533 48.4
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 6.7e-95 352.4 499 49.5
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 8.7e-95 352.1 499 49.3
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 2.1e-93 347.4 517 44.1
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 4.8e-93 346.3 505 50.7
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 8.2e-93 345.5 515 48.9
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 1.4e-92 344.7 496 49.4
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 1.4e-92 344.7 507 49.5
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 7.6e-91 339.0 522 43.7
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 1.1e-89 335.1 508 49.0
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 4.2e-89 333.2 434 51.8
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 7.1e-89 332.4 534 46.1
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 1.6e-88 331.3 507 44.0
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 1.0e-87 328.6 501 41.9
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 4.3e-86 323.2 501 41.5
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 1.8e-84 317.8 520 49.6
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 3.1e-84 317.0 553 44.5
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 1.0e-82 312.0 462 44.4
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 5.0e-82 309.7 522 45.4
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 6.5e-82 309.3 508 44.9
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 8.5e-82 308.9 494 40.5
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 8.5e-82 308.9 493 48.9
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 9.4e-81 305.4 493 46.5
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 2.6e-75 287.3 582 41.4
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 2.6e-75 287.3 582 41.4
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 8.5e-74 282.3 883 34.5
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.1e-73 282.0 581 36.5
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 7.2e-73 279.3 668 38.8
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 1.6e-51 208.4 217 53.9
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 7.2e-49 199.5 262 47.3
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 1.0e-47 195.7 146 70.5
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 4.0e-47 193.7 219 50.7
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 5.0e-42 176.8 214 50.0
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.8e-39 168.3 234 45.7
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 4.4e-38 163.7 260 41.2
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 2.0e-35 154.8 158 56.3
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 3.5e-35 154.1 472 35.6
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 5.0e-34 150.2 110 73.6
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.9e-33 148.3 82 95.1
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 4.3e-33 147.1 98 74.5
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 1.5e-30 138.7 162 50.6
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 8.0e-24 116.3 144 48.6
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 1.1e-23 115.9 144 47.9
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 2.6e-22 111.3 92 60.9
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 7.5e-22 109.8 286 29.0
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 5.4e-20 103.6 168 43.5
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 3.9e-18 97.4 151 41.1
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 2.8e-16 91.3 93 51.6
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 2.3e-15 88.2 89 52.8
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 3.7e-13 80.9 144 38.2
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 1.7e-10 72.0 50 74.0
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 1.1e-09 69.3 378 35.7
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 3.3e-09 67.8 83 48.2


User provided reference genes

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