Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 5.6e-173 610.9 313 100.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 8.1e-172 607.1 313 99.0
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 6.0e-167 590.9 313 95.5
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 8.4e-153 543.9 299 90.3
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 7.6e-138 494.2 313 78.0
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 2.5e-136 489.2 313 77.6
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 3.2e-136 488.8 313 76.7
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 5.5e-136 488.0 313 76.4
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 9.3e-136 487.3 311 76.5
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.2e-135 486.9 312 76.3
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.6e-135 486.5 313 75.4
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.6e-135 486.5 313 77.0
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.1e-135 486.1 313 75.4
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.1e-135 486.1 313 77.0
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 2.1e-135 486.1 313 76.0
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 3.5e-135 485.3 313 75.4
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 6.0e-135 484.6 313 75.7
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.0e-134 483.8 313 76.4
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 1.3e-134 483.4 313 75.1
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.8e-134 483.0 313 76.4
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.8e-134 483.0 313 76.4
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 3.9e-134 481.9 313 76.7
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 5.1e-134 481.5 313 76.0
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 8.7e-134 480.7 313 75.7
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.9e-133 479.6 313 73.8
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.9e-133 479.6 313 76.0
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 3.3e-133 478.8 311 73.6
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 9.6e-133 477.2 311 74.3
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.3e-132 476.9 313 74.4
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.6e-132 476.5 313 74.1
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 2.1e-132 476.1 314 74.5
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 2.1e-132 476.1 315 74.0
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 2.8e-132 475.7 314 76.4
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 3.7e-132 475.3 313 76.0
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.8e-131 473.0 313 73.8
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 2.4e-131 472.6 313 74.8
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 3.1e-131 472.2 315 73.3
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 3.1e-131 472.2 315 73.3
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 4.1e-131 471.9 312 73.7
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 5.3e-131 471.5 313 75.7
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.5e-130 469.9 313 73.2
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.6e-130 469.2 313 70.6
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 2.6e-130 469.2 313 73.2
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 5.9e-130 468.0 313 73.2
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 5.9e-130 468.0 314 72.3
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 1.0e-129 467.2 311 72.3
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.0e-129 467.2 313 72.2
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 2.2e-129 466.1 311 74.0
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.9e-129 465.7 291 77.7
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 6.5e-129 464.5 313 73.5
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.9e-128 463.0 312 71.8
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.9e-128 463.0 313 72.5
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 3.2e-128 462.2 312 70.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 7.2e-128 461.1 312 72.1
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 9.3e-128 460.7 313 72.2
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 9.3e-128 460.7 313 72.2
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 9.3e-128 460.7 312 70.8
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.2e-127 460.3 313 73.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.2e-127 460.3 312 73.1
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.6e-127 459.9 313 71.2
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 2.7e-127 459.1 313 71.9
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.7e-127 459.1 313 71.9
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 2.7e-127 459.1 313 71.9
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.6e-127 458.8 312 71.5
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 6.1e-127 458.0 313 71.6
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 6.1e-127 458.0 313 71.9
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 6.1e-127 458.0 313 70.6
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 7.9e-127 457.6 313 70.6
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.8e-126 456.4 298 72.5
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.3e-126 456.1 311 73.0
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 3.9e-126 455.3 313 70.6
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 5.1e-126 454.9 313 72.2
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 8.7e-126 454.1 340 67.6
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.1e-125 453.8 293 74.4
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 5.7e-125 451.4 311 72.3
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 9.7e-125 450.7 308 70.8
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.2e-124 449.5 312 70.8
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.2e-124 449.5 312 71.2
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.8e-124 449.1 312 70.8
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.8e-124 449.1 311 71.4
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 4.1e-123 445.3 303 72.9
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 6.9e-123 444.5 326 68.7
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.9e-123 444.5 326 68.7
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.9e-123 444.5 326 68.7
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 6.9e-123 444.5 290 74.5
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 6.9e-123 444.5 340 66.2
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 9.1e-123 444.1 313 69.6
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.5e-122 443.4 299 70.9
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 4.5e-122 441.8 299 71.9
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 7.7e-122 441.0 299 71.9
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 7.7e-122 441.0 299 71.9
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 1.0e-121 440.7 299 71.6
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.3e-121 440.3 326 67.8
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 1.3e-121 440.3 317 69.1
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 2.9e-121 439.1 311 69.1
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 2.9e-121 439.1 313 69.6
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 5.0e-121 438.3 318 69.5
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.1e-120 437.2 311 69.1
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-120 436.8 336 66.7
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.9e-120 436.4 308 69.8
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 3.2e-120 435.6 308 69.5
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 5.5e-120 434.9 313 69.0
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 7.2e-120 434.5 308 70.1
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 7.2e-120 434.5 326 67.5
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.7e-119 432.6 311 68.5
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 7.9e-119 431.0 286 72.4
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 3.0e-118 429.1 299 69.9
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 4.4e-117 425.2 313 68.7
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 3.1e-115 419.1 268 75.7
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.5e-114 416.8 313 66.8
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.5e-114 416.8 314 65.3
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.7e-113 413.3 257 77.4
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 2.2e-113 412.9 290 70.0
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.7e-111 405.2 291 67.0
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.0e-110 404.1 326 65.3
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 5.7e-109 398.3 298 66.1
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.2e-108 396.4 298 65.8
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.7e-108 395.6 253 74.7
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 9.4e-96 354.4 225 78.2
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 2.1e-95 353.2 233 73.4
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.3e-94 349.7 296 57.8
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 2.3e-94 349.7 313 58.5
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.4e-93 345.5 313 58.1
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.1e-91 339.3 222 73.9
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 3.8e-89 332.4 298 55.4
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.4e-86 323.9 299 55.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 7.0e-83 311.6 276 59.8
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.5e-82 309.3 313 51.8
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 6.1e-79 298.5 307 50.8
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.7e-73 280.4 275 53.8
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.1e-70 271.2 305 46.2
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 4.3e-64 249.2 214 61.7
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 2.3e-62 243.4 294 45.6
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 8.1e-47 191.8 296 38.9
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.4e-46 191.0 173 60.1
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.6e-41 172.2 104 78.8
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 6.0e-34 149.1 79 97.5
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 8.7e-33 145.2 93 77.4
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 4.0e-30 136.3 94 69.1
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 3.8e-28 129.8 90 71.1
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 7.6e-21 105.5 114 53.5
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.0e-17 95.1 89 58.4
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.0e-17 95.1 89 58.4
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 5.9e-13 79.3 89 50.6
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 3.2e-11 73.6 98 49.0


User provided reference genes

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