Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.3e-189 666.4 361 100.0
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 9.9e-187 656.8 361 98.6
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 4.5e-179 631.3 331 95.5
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 6.0e-176 620.9 331 93.7
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.7e-162 576.2 322 87.3
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 1.1e-156 557.0 317 85.8
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.4e-156 556.6 319 84.3
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 2.4e-156 555.8 317 85.5
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 4.1e-156 555.1 317 85.5
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 4.1e-156 555.1 318 85.8
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 5.3e-156 554.7 319 85.6
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.0e-155 552.7 321 83.8
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 2.6e-155 552.4 322 84.5
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.3e-154 550.1 323 84.2
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 2.2e-154 549.3 320 83.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.2e-154 549.3 325 83.1
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.2e-154 549.3 325 83.1
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 2.2e-154 549.3 319 83.1
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.9e-154 548.9 325 82.8
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 3.8e-154 548.5 319 84.6
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 6.5e-154 547.7 325 82.8
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 1.9e-153 546.2 329 82.4
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 2.5e-153 545.8 318 84.6
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 5.5e-153 544.7 324 83.6
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 9.4e-153 543.9 327 80.7
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 1.2e-152 543.5 320 82.8
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.2e-152 543.5 318 84.6
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.6e-152 543.1 325 82.5
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.1e-152 542.7 318 82.4
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.1e-152 542.7 318 82.4
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 2.1e-152 542.7 319 83.4
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 3.6e-152 542.0 318 83.6
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 6.1e-152 541.2 318 82.7
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 7.9e-152 540.8 329 80.9
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.0e-151 540.4 318 82.4
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.3e-151 539.3 319 83.1
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.9e-151 538.5 319 82.8
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 3.9e-151 538.5 318 81.4
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 6.7e-151 537.7 318 80.8
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 8.8e-151 537.3 318 82.1
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 8.8e-151 537.3 319 82.4
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.3e-150 535.4 325 80.6
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 4.4e-150 535.0 318 80.5
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 9.7e-150 533.9 323 81.1
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.7e-149 533.1 326 80.7
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 4.8e-149 531.6 318 80.2
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 6.3e-149 531.2 318 80.8
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 8.2e-149 530.8 318 81.1
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 8.2e-149 530.8 318 81.4
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.1e-148 530.4 314 81.2
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.4e-148 530.0 319 81.5
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 3.1e-148 528.9 318 79.9
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.1e-148 528.5 318 80.2
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 5.3e-148 528.1 319 80.6
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 7.0e-148 527.7 323 78.6
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 7.0e-148 527.7 318 79.9
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.2e-147 526.9 318 78.9
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.6e-147 526.6 317 80.1
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.6e-147 525.8 318 80.5
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.3e-146 523.5 318 80.2
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.7e-146 523.1 318 80.2
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.0e-146 521.5 317 79.5
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 5.5e-145 518.1 316 78.8
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 9.4e-145 517.3 287 87.8
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.6e-144 516.5 345 74.8
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 8.0e-144 514.2 319 78.4
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.0e-143 513.8 321 77.9
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 3.0e-143 512.3 318 79.6
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 5.2e-143 511.5 318 78.0
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 7.5e-142 507.7 316 75.9
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 7.5e-142 507.7 317 78.5
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 2.8e-141 505.8 322 76.4
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 4.8e-141 505.0 328 75.3
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 8.2e-141 504.2 317 77.9
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 8.2e-141 504.2 318 76.4
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.1e-140 503.8 318 76.7
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.1e-140 503.8 322 77.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.4e-140 502.7 323 76.5
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 3.1e-140 502.3 324 76.9
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 7.0e-140 501.1 318 77.0
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 4.5e-139 498.4 322 77.0
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 7.7e-139 497.7 322 77.0
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.0e-138 497.3 323 75.9
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 1.7e-138 496.5 318 77.4
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.7e-138 496.5 322 76.7
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 5.0e-138 495.0 318 74.5
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 6.5e-138 494.6 322 76.1
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 1.1e-137 493.8 327 75.5
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 1.1e-137 493.8 331 71.9
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.2e-137 491.1 321 73.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.6e-136 490.0 287 82.9
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.6e-136 488.8 321 74.5
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 4.7e-136 488.4 288 81.9
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.5e-134 483.4 292 81.2
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 2.2e-133 479.6 320 71.6
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 3.8e-130 468.8 348 68.1
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.2e-129 465.7 256 85.9
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 5.5e-129 464.9 286 79.0
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 6.8e-127 458.0 287 77.7
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 4.4e-126 455.3 319 74.0
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.8e-125 452.6 255 85.1
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.8e-125 452.6 255 85.1
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.1e-124 450.7 254 85.0
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 9.2e-124 447.6 326 69.6
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 8.0e-120 434.5 340 66.2
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 2.0e-118 429.9 270 78.5
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 9.2e-116 421.0 255 80.4
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.2e-112 408.3 222 88.3
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 5.4e-108 395.2 232 83.2
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 8.6e-106 387.9 324 60.2
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.2e-104 384.0 322 59.9
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 4.3e-97 359.0 294 60.5
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 5.1e-82 308.9 303 53.1
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 8.1e-80 301.6 166 88.0
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 4.5e-78 295.8 279 60.2
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 4.5e-78 295.8 212 66.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.5e-73 280.0 172 80.8
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.1e-65 254.6 215 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 8.1e-64 248.4 216 59.3
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.4e-63 247.7 148 81.8
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 8.5e-53 211.8 319 38.9
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.0e-50 204.9 177 59.9
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.4e-47 194.5 313 41.9
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.2e-43 181.4 236 43.6
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.4e-42 177.9 405 32.1
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 1.3e-37 161.4 114 69.3
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.1e-36 158.3 231 47.2
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.5e-33 147.9 316 35.1
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.5e-33 147.9 110 66.4
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.9e-20 104.4 250 34.8
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 4.7e-19 99.8 57 86.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.8e-16 90.5 98 50.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 5.4e-15 86.3 45 86.7
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 5.9e-14 82.8 55 74.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 1.2e-11 75.1 78 50.0
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 3.7e-08 63.5 38 73.7
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 5.9e-06 56.2 36 75.0


User provided reference genes

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