Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.6e-212 741.9 406 100.0
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 9.2e-181 637.1 433 85.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 4.4e-175 618.2 417 83.7
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 5.2e-152 541.6 422 75.4
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.3e-139 500.4 411 72.7
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.1e-84 317.0 416 54.3
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.7e-84 316.6 402 49.3
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.2e-82 311.2 415 53.3
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.2e-82 311.2 408 53.7
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 7.5e-82 308.5 410 48.0
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.2e-81 307.0 422 50.5
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.4e-80 303.5 421 47.7
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 7.0e-80 302.0 417 51.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.2e-79 301.2 417 48.0
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.0e-79 300.4 435 49.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.4e-77 291.6 422 46.4
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.2e-76 291.2 416 45.7
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.6e-76 290.8 422 46.2
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 1.4e-75 287.7 419 48.4
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.0e-75 286.2 419 46.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.2e-74 284.6 416 45.9
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 5.7e-74 282.3 410 49.3
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.3e-73 281.2 422 45.7
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.7e-73 280.8 417 46.3
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-72 278.1 420 44.8
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.1e-72 278.1 412 50.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.4e-72 277.7 421 45.8
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.8e-72 277.3 414 44.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 7.0e-72 275.4 416 46.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.6e-71 274.2 408 45.8
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.5e-71 273.1 421 47.3
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 7.7e-71 271.9 400 47.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.8e-70 269.6 419 48.4
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.8e-70 269.6 395 44.1
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.0e-70 269.2 418 45.9
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 6.6e-70 268.9 415 48.2
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 8.6e-70 268.5 418 42.6
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.9e-69 267.3 424 47.2
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 4.2e-69 266.2 405 44.2
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.5e-69 265.8 418 45.0
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 9.5e-69 265.0 418 42.3
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 9.5e-69 265.0 398 50.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-68 264.6 415 47.7
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.8e-68 263.5 417 43.2
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 6.1e-68 262.3 399 42.6
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 8.0e-68 261.9 425 44.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 8.0e-68 261.9 417 49.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.0e-67 261.5 437 43.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.0e-67 261.5 420 46.2
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.2e-66 258.1 419 45.8
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.2e-66 258.1 400 42.8
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.3e-65 254.6 406 44.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.2e-65 253.8 410 47.3
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.7e-65 253.1 358 46.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.1e-64 251.5 410 47.1
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.1e-64 250.0 403 43.7
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.1e-64 250.0 422 42.2
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.2e-63 248.1 419 42.7
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.2e-63 248.1 404 45.8
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.5e-63 246.1 403 42.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.0e-62 245.0 356 46.9
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.0e-62 245.0 421 42.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.3e-62 243.8 409 42.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.3e-62 243.8 423 42.3
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 2.9e-62 243.4 405 42.7
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 6.6e-62 242.3 406 42.1
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 8.6e-62 241.9 420 40.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.9e-61 240.7 398 46.7
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 4.3e-61 239.6 398 46.5
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.2e-60 238.0 424 42.2
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.6e-60 237.7 430 39.8
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.4e-59 234.6 418 44.0
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 4.0e-59 233.0 463 43.8
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 8.9e-59 231.9 404 45.5
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.2e-57 227.3 394 46.2
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.2e-57 227.3 395 43.3
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 6.4e-57 225.7 406 41.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.0e-56 222.2 416 39.7
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.0e-54 218.4 412 41.7
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.3e-54 217.2 419 39.9
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.5e-53 214.5 423 43.0
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.9e-53 214.2 172 66.3
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.5e-53 213.8 423 40.2
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.3e-53 213.4 413 40.4
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.3e-53 213.0 407 44.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 5.6e-53 212.6 290 47.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 9.5e-53 211.8 375 41.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.2e-52 211.5 415 39.8
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 8.9e-51 205.3 407 39.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.6e-50 203.8 412 43.4
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.4e-50 203.0 411 43.1
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.9e-49 200.3 413 37.0
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 4.9e-49 199.5 416 43.5
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-48 198.4 205 57.6
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 9.2e-48 195.3 424 42.0
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.6e-47 194.5 417 39.8
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.7e-47 193.7 359 39.0
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 3.5e-47 193.4 395 39.0
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 2.3e-46 190.7 406 36.9
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 2.3e-46 190.7 406 36.9
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.3e-46 190.7 416 38.0
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 8.6e-46 188.7 411 42.6
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.6e-46 188.7 421 44.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-45 188.0 402 38.6
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-45 188.0 402 38.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-45 187.6 402 40.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.9e-45 187.6 402 40.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.9e-45 187.6 402 40.3
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.8e-44 183.7 403 38.2
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.6e-44 183.3 194 55.7
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.7e-44 183.0 407 41.0
MELO3C012884.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.8e-43 181.0 141 70.2
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 8.9e-43 178.7 421 37.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.0e-42 177.6 403 39.7
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.0e-42 177.6 403 39.7
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.0e-42 177.6 403 39.7
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 3.4e-42 176.8 366 39.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.8e-42 176.0 402 38.8
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 7.5e-42 175.6 399 40.6
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.4e-40 170.6 397 39.8
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 3.2e-40 170.2 396 35.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 7.1e-40 169.1 397 36.5
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-39 168.3 354 40.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.5e-39 166.8 455 33.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 8.6e-38 162.2 409 34.2
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.3e-37 160.2 411 38.4
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-36 157.5 364 39.0
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.1e-36 157.5 364 39.0
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 5.8e-34 149.4 359 39.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.2e-33 147.5 376 33.5
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.9e-33 146.4 410 39.5
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 8.4e-33 145.6 402 34.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.1e-32 145.2 396 35.6
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.9e-32 144.4 297 42.1
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 5.6e-29 132.9 274 39.8
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 4.0e-27 126.7 405 32.8
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.8e-26 122.9 279 37.3
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 2.8e-20 104.0 197 42.1
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.8e-20 103.2 231 42.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.0e-19 99.0 221 37.1
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 9.3e-16 89.0 154 40.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 6.9e-11 72.8 351 25.9
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 8.7e-06 55.8 52 65.4


User provided reference genes

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