Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.5e-49 198.0 100 100.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.9e-42 175.6 100 90.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 4.6e-41 171.0 100 86.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.9e-40 167.9 100 85.0
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.4e-34 148.7 92 79.3
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.1e-33 145.6 95 76.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.3e-32 142.9 95 75.8
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.7e-32 142.5 84 83.3
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.0e-32 141.7 95 74.7
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.7e-32 140.2 93 76.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.1e-31 139.8 93 78.5
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.9e-31 139.0 95 73.7
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.9e-31 139.0 85 77.6
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.5e-31 138.7 86 81.4
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.5e-31 138.7 95 74.7
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.5e-31 138.7 81 84.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.5e-31 138.7 81 85.2
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.3e-31 138.3 89 78.7
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 4.3e-31 137.9 84 79.8
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 5.6e-31 137.5 82 84.1
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.6e-31 137.5 97 72.2
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.6e-31 137.5 93 74.2
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 7.3e-31 137.1 85 78.8
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 9.6e-31 136.7 83 79.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.3e-30 136.3 84 81.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.6e-30 136.0 81 81.5
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.6e-30 136.0 85 77.6
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.6e-30 136.0 81 85.2
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.1e-30 135.6 81 84.0
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.8e-30 135.2 81 81.5
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.8e-30 135.2 83 80.7
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.8e-30 135.2 83 80.7
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 4.8e-30 134.4 80 82.5
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 4.8e-30 134.4 99 68.7
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 8.1e-30 133.7 86 76.7
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.4e-29 132.9 81 82.7
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.4e-29 132.9 81 82.7
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.8e-29 132.5 82 80.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.8e-29 132.5 81 79.0
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.8e-29 132.5 83 78.3
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 2.4e-29 132.1 82 80.5
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.1e-29 131.7 91 72.5
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 4.0e-29 131.3 82 80.5
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 5.3e-29 131.0 81 80.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 5.3e-29 131.0 94 70.2
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.9e-29 130.6 88 72.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 9.0e-29 130.2 90 73.3
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.2e-28 129.8 81 79.0
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.2e-28 129.8 87 72.4
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.2e-28 129.8 95 66.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.6e-28 128.6 96 68.8
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 2.6e-28 128.6 91 68.1
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 3.4e-28 128.3 89 69.7
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.4e-28 128.3 85 72.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 4.4e-28 127.9 82 75.6
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 4.4e-28 127.9 84 75.0
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 4.4e-28 127.9 82 74.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.8e-28 127.5 83 75.9
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 5.8e-28 127.5 83 75.9
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 7.6e-28 127.1 96 68.8
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 9.9e-28 126.7 91 70.3
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-27 126.3 91 70.3
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 96 64.6
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-27 126.3 96 64.6
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.7e-27 125.9 80 82.5
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.7e-27 125.9 76 84.2
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.7e-27 125.9 76 84.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.7e-27 125.9 76 84.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.2e-27 125.6 80 73.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 2.2e-27 125.6 84 75.0
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 2.2e-27 125.6 90 65.6
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-27 124.8 95 62.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-27 124.8 95 62.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.8e-27 124.8 96 62.5
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 3.8e-27 124.8 76 82.9
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.8e-27 124.8 80 73.8
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 3.8e-27 124.8 84 73.8
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 3.8e-27 124.8 84 73.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.9e-27 124.4 86 72.1
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 4.9e-27 124.4 96 60.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 4.9e-27 124.4 96 61.5
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 4.9e-27 124.4 96 61.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 4.9e-27 124.4 81 76.5
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.9e-27 124.4 84 73.8
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 4.9e-27 124.4 77 83.1
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 6.4e-27 124.0 96 62.5
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 6.4e-27 124.0 84 72.6
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 8.4e-27 123.6 95 64.2
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 8.4e-27 123.6 95 64.2
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 8.4e-27 123.6 95 64.2
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 8.4e-27 123.6 76 80.3
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.1e-26 123.2 98 66.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.1e-26 123.2 76 82.9
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.4e-26 122.9 93 65.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.4e-26 122.9 80 73.8
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-26 122.5 80 73.8
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.4e-26 120.9 98 64.3
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 5.4e-26 120.9 93 68.8
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 7.1e-26 120.6 74 83.8
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 7.1e-26 120.6 82 70.7
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 7.1e-26 120.6 81 69.1
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 7.1e-26 120.6 80 73.8
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 9.3e-26 120.2 83 75.9
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.6e-25 119.4 81 70.4
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 67.9
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 67.9
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 67.9
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 67.9
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 2.1e-25 119.0 80 72.5
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.5e-25 118.2 82 75.6
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.5e-25 118.2 95 61.1
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.0e-25 117.5 76 80.3
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.0e-24 116.7 76 76.3
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.7e-24 115.9 95 61.1
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.3e-24 115.5 89 73.0
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 2.3e-24 115.5 76 75.0
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 3.0e-24 115.2 76 75.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 6.6e-24 114.0 81 75.3
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 6.6e-24 114.0 78 75.6
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 6.6e-24 114.0 77 77.9
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 6.6e-24 114.0 80 75.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.1e-23 113.2 71 81.7
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 4.3e-23 111.3 82 64.6
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 4.3e-23 111.3 82 64.6
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 4.3e-23 111.3 82 64.6
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 5.6e-23 110.9 88 65.9
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.6e-22 109.4 78 70.5
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.1e-21 106.7 73 74.0
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.0e-20 102.4 78 69.2
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 4.5e-20 101.3 74 73.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.4e-18 96.3 83 61.4
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.4e-18 96.3 78 64.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 5.4e-18 94.4 73 68.5
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.1e-17 92.4 79 59.5
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.9e-16 88.2 54 77.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 6.7e-16 87.4 95 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.3e-15 85.1 77 58.4
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 9.6e-15 83.6 57 70.2
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-14 82.4 59 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.7e-14 81.6 78 59.0
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.1e-13 78.6 52 73.1
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.1e-13 78.6 52 73.1
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.0e-13 78.2 83 48.2
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.7e-11 72.8 51 66.7
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 5.7e-07 57.8 39 74.4


User provided reference genes

Program Settings