Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 3.3e-98 362.1 238 100.0
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 7.2e-93 344.4 238 96.2
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 3.9e-91 338.6 238 94.5
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.1e-72 277.3 238 84.5
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.4e-67 260.4 239 79.9
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 4.9e-65 251.9 238 78.6
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 7.0e-64 248.1 238 77.7
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.6e-63 246.9 234 78.6
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.5e-63 245.7 238 78.2
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 4.5e-63 245.4 237 78.5
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 7.8e-63 244.6 238 76.9
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 7.8e-63 244.6 238 77.3
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 8.6e-62 241.1 254 74.0
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.1e-61 240.7 238 77.7
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 1.9e-61 240.0 238 77.7
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 2.5e-61 239.6 240 76.2
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 7.3e-61 238.0 243 75.7
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.2e-60 237.3 238 77.3
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.6e-60 236.9 238 77.3
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 2.1e-60 236.5 240 75.4
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 3.6e-60 235.7 241 76.3
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 6.1e-60 235.0 242 76.9
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 1.0e-59 234.2 238 76.1
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 2.3e-59 233.0 239 74.9
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 3.1e-59 232.6 238 74.4
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 5.2e-59 231.9 238 76.9
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 6.8e-59 231.5 240 76.7
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 8.9e-59 231.1 205 84.9
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 8.9e-59 231.1 239 74.5
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.2e-58 230.7 231 76.2
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.5e-58 230.3 238 76.1
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 2.0e-58 229.9 239 74.1
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 7.5e-58 228.0 241 75.5
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 7.5e-58 228.0 239 73.2
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 9.8e-58 227.6 232 77.6
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 9.8e-58 227.6 238 75.6
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 2.2e-57 226.5 238 74.8
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.2e-57 226.5 238 74.8
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.9e-57 226.1 240 75.4
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 6.4e-57 224.9 239 74.5
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.4e-56 223.8 249 61.8
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.4e-56 223.8 241 75.1
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.9e-56 223.4 191 87.4
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 4.1e-56 222.2 237 75.5
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 7.0e-56 221.5 237 74.3
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.5e-55 219.2 238 74.8
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.5e-55 219.2 238 74.8
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.5e-55 219.2 258 50.0
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.0e-55 218.4 238 74.8
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 6.0e-55 218.4 237 73.8
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 7.8e-55 218.0 190 87.9
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.0e-54 216.1 200 83.5
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.9e-54 215.7 199 83.9
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 5.0e-54 215.3 262 55.7
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 6.6e-54 214.9 186 86.0
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.1e-53 214.2 186 84.9
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.5e-53 213.8 239 71.5
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.9e-53 213.4 241 73.9
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.6e-53 211.8 238 73.1
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.2e-52 210.7 238 72.3
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 1.2e-52 210.7 244 72.5
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.6e-52 210.3 159 67.9
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 2.8e-52 209.5 238 71.8
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 2.8e-52 209.5 240 70.8
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 4.7e-52 208.8 238 72.7
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 8.0e-52 208.0 238 71.8
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 8.0e-52 208.0 242 72.3
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.1e-51 207.6 225 75.6
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.1e-51 207.6 191 84.3
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 2.3e-51 206.5 242 71.5
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 3.1e-51 206.1 159 66.0
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 4.0e-51 205.7 244 71.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 4.0e-51 205.7 205 79.5
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 5.2e-51 205.3 241 68.5
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 5.2e-51 205.3 200 80.5
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 6.8e-51 204.9 242 72.3
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 6.8e-51 204.9 206 78.6
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.5e-50 203.8 212 79.2
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 2.0e-50 203.4 197 81.7
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.6e-50 203.0 200 65.0
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.6e-50 203.0 211 76.3
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 3.4e-50 202.6 200 80.0
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.8e-50 201.8 258 48.1
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.7e-49 200.3 242 66.5
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 2.9e-49 199.5 241 67.2
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.9e-49 199.5 210 77.6
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 3.7e-49 199.1 241 68.0
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 4.9e-49 198.7 241 69.3
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.4e-48 197.2 198 78.3
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.1e-48 195.7 242 69.0
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 5.4e-48 195.3 244 69.3
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 2.1e-47 193.4 243 58.8
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 2.7e-47 193.0 241 67.2
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-47 193.0 238 70.6
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 4.6e-47 192.2 200 78.5
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 6.0e-47 191.8 188 80.9
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.0e-46 191.0 241 67.6
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 6.6e-46 188.3 239 67.4
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 6.6e-46 188.3 239 67.4
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 1.5e-45 187.2 239 67.4
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 4.3e-45 185.7 245 66.1
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.3e-45 185.7 131 72.5
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.6e-45 185.3 127 74.0
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.6e-45 185.3 127 74.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 9.5e-45 184.5 241 66.4
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.2e-44 184.1 210 51.9
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.2e-44 184.1 210 51.9
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-44 182.6 127 72.4
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-43 181.0 127 72.4
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.1e-43 181.0 241 65.1
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 2.3e-43 179.9 186 79.0
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.9e-43 177.9 125 70.4
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.9e-43 177.9 129 69.8
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.6e-42 176.4 238 49.2
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 5.8e-42 175.3 105 80.0
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.7e-41 173.7 209 68.4
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-40 170.6 238 49.2
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 4.1e-40 169.1 226 66.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.3e-38 164.1 165 84.2
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-38 164.1 157 89.2
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-38 164.1 158 87.3
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 5.6e-37 158.7 243 64.2
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.8e-35 153.7 231 58.0
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 1.7e-33 147.1 156 81.4
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-32 142.9 77 88.3
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 3.5e-31 139.4 105 63.8
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.0e-30 137.9 177 46.9
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.8e-20 103.2 64 73.4
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 2.5e-13 80.1 81 48.1
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 1.3e-12 77.8 181 40.9
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.8e-12 76.6 116 77.6


User provided reference genes

Program Settings