Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.9e-92 342.4 164 100.0
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 3.9e-90 334.7 164 98.2
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 5.5e-84 314.3 164 89.6
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 1.9e-76 289.3 140 97.1
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 1.7e-64 249.6 166 72.3
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.1e-63 246.9 164 73.2
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 1.2e-62 243.4 161 71.4
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 2.7e-62 242.3 166 70.5
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 4.5e-62 241.5 167 68.9
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 7.7e-62 240.7 167 70.1
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 7.7e-62 240.7 164 71.3
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 1.3e-61 240.0 165 69.7
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 1.3e-61 240.0 165 70.9
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 5.0e-61 238.0 164 70.1
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 1.1e-60 236.9 167 68.9
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 1.5e-60 236.5 166 71.1
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 1.9e-60 236.1 170 67.1
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 4.2e-60 235.0 195 62.6
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 8.0e-59 230.7 161 68.3
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 1.4e-58 229.9 164 72.0
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 3.0e-58 228.8 167 68.9
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 3.0e-58 228.8 167 66.5
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 4.0e-58 228.4 166 70.5
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 6.8e-58 227.6 162 66.7
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.2e-57 226.9 165 67.9
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 2.0e-57 226.1 165 66.1
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 3.4e-57 225.3 164 65.9
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 2.8e-56 222.2 164 68.3
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 6.3e-56 221.1 164 64.6
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 2.4e-55 219.2 164 66.5
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 7.0e-55 217.6 164 67.1
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.0e-53 213.8 164 64.0
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 8.6e-53 210.7 164 62.2
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 8.6e-53 210.7 166 63.9
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.5e-52 209.9 164 64.0
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 4.2e-52 208.4 166 60.2
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 5.5e-52 208.0 166 60.2
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 9.5e-52 207.2 166 60.2
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 2.1e-51 206.1 164 64.6
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 2.1e-51 206.1 167 63.5
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 6.1e-51 204.5 136 73.5
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 1.4e-50 203.4 164 59.1
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 5.2e-50 201.4 166 62.0
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 5.2e-50 201.4 164 62.2
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.2e-50 201.4 164 63.4
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 2.6e-49 199.1 164 60.4
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 3.4e-49 198.7 166 62.0
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 5.7e-49 198.0 172 59.3
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 9.8e-49 197.2 161 60.9
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 3.7e-48 195.3 165 59.4
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 6.3e-48 194.5 188 55.9
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 6.3e-48 194.5 161 60.9
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 1.4e-47 193.4 133 69.9
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 3.1e-47 192.2 161 60.2
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 4.1e-47 191.8 133 68.4
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 7.0e-47 191.0 164 60.4
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 7.0e-47 191.0 165 57.6
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 9.2e-47 190.7 144 66.7
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 1.3e-45 186.8 156 59.6
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 6.6e-45 184.5 162 57.4
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 3.3e-44 182.2 163 57.7
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 1.2e-43 180.3 134 66.4
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 1.0e-42 177.2 176 51.1
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 3.0e-42 175.6 170 54.7
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 6.8e-42 174.5 131 67.2
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.4e-39 166.0 137 59.9
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.7e-37 159.8 142 57.7
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 5.6e-36 154.8 164 52.4
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 3.6e-35 152.1 128 60.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 2.0e-33 146.4 136 58.8
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 1.6e-30 136.7 94 66.0
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 6.6e-29 131.3 108 58.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 8.6e-29 131.0 80 72.5
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.8e-26 123.2 164 42.7
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 2.0e-25 119.8 80 66.2
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 3.2e-23 112.5 164 37.8
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 5.1e-21 105.1 149 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.1e-20 104.0 187 32.1
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.9e-20 103.2 84 61.9
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 6.4e-16 88.2 84 57.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.2e-06 57.4 92 35.9
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 4.6e-06 55.5 145 29.0
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 6.0e-06 55.1 90 34.4
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 7.8e-06 54.7 90 34.4


User provided reference genes

Program Settings