Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.0e-74 283.5 161 100.0
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.7e-66 256.1 159 88.7
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.0e-58 230.3 161 84.5
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.1e-20 104.0 161 46.6
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 6.1e-19 98.2 163 43.6
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 6.1e-19 98.2 160 51.2
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.4e-18 97.1 160 52.5
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.8e-18 96.7 160 52.5
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 3.3e-17 92.4 173 46.2
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 6.9e-15 84.7 164 45.1
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.4e-12 77.0 162 37.0
Eucgr.F01166 Eucalyptus grandis HOM05D005020 ORTHO05D006017 3.2e-12 75.9 119 47.9
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 2.6e-09 66.2 45 62.2
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.3e-09 65.9 50 66.0
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 5.7e-09 65.1 50 62.0
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 5.7e-09 65.1 50 62.0
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 7.4e-09 64.7 50 64.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 1.3e-08 63.9 50 64.0
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 2.2e-08 63.2 46 67.4
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 4.8e-08 62.0 44 63.6
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 4.8e-08 62.0 50 60.0
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 4.8e-08 62.0 50 60.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 6.3e-08 61.6 50 60.0
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 6.3e-08 61.6 50 60.0
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 6.3e-08 61.6 44 61.4
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 6.3e-08 61.6 44 61.4
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 6.3e-08 61.6 44 61.4
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 6.3e-08 61.6 44 61.4
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 6.3e-08 61.6 44 61.4
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 6.3e-08 61.6 50 60.0
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 8.2e-08 61.2 44 61.4
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 8.2e-08 61.2 44 61.4
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.1e-07 60.8 46 63.0
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.1e-07 60.8 44 61.4
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-07 60.8 44 61.4
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-07 60.8 44 61.4
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-07 60.8 44 61.4
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-07 60.8 44 61.4
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.1e-07 60.8 45 64.4
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.4e-07 60.5 50 58.0
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.4e-07 60.5 46 60.9
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 1.4e-07 60.5 44 61.4
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.4e-07 60.5 50 60.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.4e-07 60.5 45 64.4
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 1.8e-07 60.1 46 60.9
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 1.8e-07 60.1 47 63.8
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.8e-07 60.1 44 61.4
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.4e-07 59.7 45 64.4
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.4e-07 59.7 45 64.4
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 3.1e-07 59.3 44 59.1
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 3.1e-07 59.3 44 59.1
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 3.1e-07 59.3 46 58.7
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 3.1e-07 59.3 44 59.1
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 3.1e-07 59.3 45 62.2
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 4.1e-07 58.9 44 59.1
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 4.1e-07 58.9 155 36.1
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 5.3e-07 58.5 44 59.1
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 5.3e-07 58.5 45 60.0
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.3e-07 58.5 44 59.1
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.3e-07 58.5 44 59.1
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 5.3e-07 58.5 44 59.1
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 7.0e-07 58.2 44 59.1
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 7.0e-07 58.2 44 59.1
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 7.0e-07 58.2 45 60.0
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 9.1e-07 57.8 45 60.0
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 9.1e-07 57.8 45 57.8
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 9.1e-07 57.8 45 57.8
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 9.1e-07 57.8 136 39.0
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.2e-06 57.4 45 60.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.2e-06 57.4 45 60.0
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 1.2e-06 57.4 44 56.8
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 1.2e-06 57.4 45 60.0
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.6e-06 57.0 45 60.0
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 2.0e-06 56.6 45 57.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.0e-06 56.6 45 60.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 2.0e-06 56.6 45 60.0
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 2.0e-06 56.6 45 60.0
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 2.6e-06 56.2 45 57.8
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.6e-06 56.2 46 58.7
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 3.5e-06 55.8 48 56.2
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 5.9e-06 55.1 48 56.2
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 5.9e-06 55.1 48 56.2
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 5.9e-06 55.1 48 56.2
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 7.7e-06 54.7 45 51.1


User provided reference genes

Program Settings