Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 4.2e-148 528.1 284 100.0
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 4.2e-116 421.8 303 81.8
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 1.1e-100 370.5 285 76.8
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.2e-81 307.4 266 68.8
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 8.1e-51 204.9 258 52.7
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 4.0e-50 202.6 273 52.0
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 2.2e-48 196.8 255 54.1
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 2.9e-48 196.4 264 50.4
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 6.4e-48 195.3 255 52.9
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 3.2e-47 193.0 269 51.3
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.2e-47 193.0 254 52.4
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.2e-47 193.0 254 52.4
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 7.1e-47 191.8 256 53.9
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.6e-46 190.7 253 51.8
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.1e-46 190.3 247 51.8
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 4.6e-46 189.1 291 49.1
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.0e-46 188.7 253 52.6
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 7.9e-46 188.3 264 49.2
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 7.9e-46 188.3 261 51.3
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.0e-45 188.0 253 51.4
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.3e-45 187.6 232 53.0
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 1.3e-45 187.6 264 52.3
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 1.8e-45 187.2 261 52.5
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 1.8e-45 187.2 269 49.8
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 3.9e-45 186.0 222 53.6
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 5.1e-45 185.7 236 52.5
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 6.7e-45 185.3 238 55.5
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 6.7e-45 185.3 261 52.1
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 1.1e-44 184.5 224 55.8
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 1.5e-44 184.1 268 49.3
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.5e-44 184.1 236 50.8
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 1.9e-44 183.7 236 52.5
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 1.9e-44 183.7 226 51.8
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 4.3e-44 182.6 259 51.7
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 5.6e-44 182.2 260 51.2
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 7.4e-44 181.8 250 52.0
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 9.6e-44 181.4 219 55.3
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 9.6e-44 181.4 272 50.7
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 1.6e-43 180.6 211 57.3
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 2.1e-43 180.3 235 55.3
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 2.8e-43 179.9 236 53.4
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 3.7e-43 179.5 273 47.3
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 6.2e-43 178.7 238 51.7
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 1.1e-42 177.9 192 58.3
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 1.4e-42 177.6 238 50.8
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 1.8e-42 177.2 260 50.8
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 1.8e-42 177.2 260 50.8
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 1.8e-42 177.2 262 48.9
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 1.8e-42 177.2 278 49.6
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 2.4e-42 176.8 208 53.8
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 4.0e-42 176.0 270 50.0
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 6.9e-42 175.3 265 49.1
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 6.9e-42 175.3 246 50.4
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 6.9e-42 175.3 253 47.0
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 6.9e-42 175.3 269 49.8
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 9.0e-42 174.9 235 50.6
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 9.0e-42 174.9 221 52.5
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 2.0e-41 173.7 239 47.7
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 2.0e-41 173.7 253 50.2
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 2.0e-41 173.7 252 48.4
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 2.6e-41 173.3 247 48.6
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 4.5e-41 172.6 237 50.6
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 4.5e-41 172.6 283 48.8
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 5.8e-41 172.2 248 48.8
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 7.6e-41 171.8 287 44.9
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 1.0e-40 171.4 192 56.2
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 1.3e-40 171.0 136 71.3
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.7e-40 170.6 241 49.8
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 2.2e-40 170.2 255 49.4
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 3.8e-40 169.5 175 59.4
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 1.1e-39 167.9 253 50.6
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 2.5e-39 166.8 260 48.5
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 5.5e-39 165.6 237 49.8
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 7.1e-39 165.2 248 49.2
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 9.3e-39 164.9 264 48.1
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 1.2e-38 164.5 230 50.0
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 1.6e-38 164.1 263 46.8
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 3.5e-38 162.9 263 46.0
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 6.0e-38 162.2 221 50.2
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 1.0e-37 161.4 311 44.7
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 1.0e-37 161.4 266 45.1
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 2.3e-37 160.2 256 48.0
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 3.0e-37 159.8 230 49.6
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 3.0e-37 159.8 271 47.2
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 6.7e-37 158.7 218 48.2
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 3.3e-36 156.4 274 44.9
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 9.6e-36 154.8 258 44.6
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 1.6e-35 154.1 180 53.9
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 6.3e-35 152.1 219 49.8
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 2.4e-34 150.2 213 50.2
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 2.4e-34 150.2 254 46.1
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 2.4e-34 150.2 180 56.1
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 2.0e-33 147.1 195 52.8
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 2.0e-33 147.1 298 42.3
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 2.6e-33 146.7 267 43.4
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 5.9e-33 145.6 176 52.8
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 1.0e-32 144.8 200 50.0
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 2.9e-32 143.3 201 51.2
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 2.9e-32 143.3 271 42.4
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 3.8e-32 142.9 157 58.0
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 3.8e-32 142.9 218 48.6
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 6.5e-32 142.1 291 39.9
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 1.1e-31 141.4 155 59.4
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 3.2e-31 139.8 200 49.0
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 7.2e-31 138.7 159 54.1
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 1.2e-30 137.9 227 45.8
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 4.6e-30 136.0 224 46.9
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 2.3e-29 133.7 200 48.0
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 2.3e-29 133.7 168 50.6
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 3.0e-29 133.3 245 44.1
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 5.1e-29 132.5 98 76.5
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 8.7e-29 131.7 160 50.0
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 1.1e-28 131.3 367 38.1
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 5.7e-28 129.0 251 41.4
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 5.7e-28 129.0 267 41.2
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 2.2e-27 127.1 169 49.7
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 2.2e-27 127.1 299 40.1
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 8.2e-27 125.2 216 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 1.4e-26 124.4 176 51.1
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 4.5e-25 119.4 204 44.1
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 4.5e-25 119.4 175 50.3
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 4.5e-25 119.4 175 50.3
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 6.5e-24 115.5 252 40.5
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 8.5e-24 115.2 183 45.9
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 9.4e-23 111.7 198 42.9
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 7.9e-22 108.6 72 77.8
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 7.9e-22 108.6 71 77.5
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.2e-19 100.5 136 49.3
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 4.1e-18 96.3 87 56.3
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 2.6e-17 93.6 56 87.5
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 5.0e-16 89.4 145 40.0
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 1.9e-15 87.4 98 54.1
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 1.4e-13 81.3 62 67.7
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.0e-12 77.4 112 47.3
arahy.Tifrunner.gnm1.ann1.P8QCSH Arachis hypogaea HOM05D005376 ORTHO05D006481 5.7e-12 75.9 109 46.8
Peaxi162Scf00057g10027 Petunia axillaris HOM05D005376 ORTHO05D006481 6.3e-11 72.4 169 36.7
AL2G18000 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.1e-07 61.6 83 49.4
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 1.9e-07 60.8 76 46.1
BcaB01g04187 Brassica carinata HOM05D005376 ORTHO05D006481 2.5e-07 60.5 136 36.0
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 2.5e-07 60.5 86 44.2
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 2.5e-07 60.5 147 36.7
AL7G52340 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.2e-07 60.1 85 47.1
AL3G17700 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 4.2e-07 59.7 52 65.4
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 5.5e-07 59.3 105 38.1
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 7.2e-07 58.9 90 37.8
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 9.4e-07 58.5 74 44.6
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 9.4e-07 58.5 61 52.5
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 9.4e-07 58.5 146 34.2
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 9.4e-07 58.5 77 46.8
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 9.4e-07 58.5 77 45.5
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 9.4e-07 58.5 123 38.2
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.2e-06 58.2 58 50.0
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.2e-06 58.2 74 44.6
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 1.6e-06 57.8 76 44.7
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 2.1e-06 57.4 102 41.2
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.7e-06 57.0 110 35.5
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 2.7e-06 57.0 65 47.7
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 3.6e-06 56.6 130 38.5
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 3.6e-06 56.6 74 45.9
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 3.6e-06 56.6 63 46.0
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 3.6e-06 56.6 77 42.9
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 4.7e-06 56.2 77 45.5
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 4.7e-06 56.2 74 47.3
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.7e-06 56.2 74 47.3
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.7e-06 56.2 74 47.3
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.7e-06 56.2 74 47.3
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.7e-06 56.2 74 47.3
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 4.7e-06 56.2 60 50.0
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 4.7e-06 56.2 84 41.7
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 4.7e-06 56.2 85 42.4
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 4.7e-06 56.2 62 48.4
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 6.1e-06 55.8 76 43.4
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 6.1e-06 55.8 75 41.3
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 6.1e-06 55.8 60 50.0
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 6.1e-06 55.8 60 50.0
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 8.0e-06 55.5 93 35.5
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 8.0e-06 55.5 93 38.7
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 8.0e-06 55.5 64 46.9
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 8.0e-06 55.5 60 48.3
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 8.0e-06 55.5 103 39.8
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 8.0e-06 55.5 147 35.4


User provided reference genes

Program Settings