Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 1.2e-85 320.5 266 100.0
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 1.3e-71 273.9 268 91.0
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 6.2e-61 238.4 242 88.8
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 1.4e-57 227.3 267 82.4
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 1.3e-39 167.5 274 69.3
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 3.0e-39 166.4 265 69.4
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 3.9e-39 166.0 265 69.4
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 5.7e-38 162.2 264 69.3
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 9.7e-38 161.4 290 62.4
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.3e-37 161.0 267 63.3
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 1.3e-37 161.0 267 63.3
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 3.7e-37 159.5 283 67.1
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 6.3e-37 158.7 259 71.4
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 1.1e-36 157.9 278 64.7
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.1e-36 157.9 280 64.3
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 3.1e-36 156.4 282 65.6
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 4.1e-36 156.0 281 62.6
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 5.3e-36 155.6 276 63.4
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 9.0e-36 154.8 281 67.6
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 9.0e-36 154.8 280 63.6
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 1.2e-35 154.5 276 68.8
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 1.5e-35 154.1 284 66.2
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 1.5e-35 154.1 271 63.1
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 2.6e-35 153.3 281 56.6
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 2.6e-35 153.3 267 63.3
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 7.6e-35 151.8 286 62.6
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 1.0e-34 151.4 273 62.6
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 1.0e-34 151.4 284 63.4
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 1.3e-34 151.0 283 64.3
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 3.8e-34 149.4 277 65.0
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 1.4e-33 147.5 272 62.1
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 2.5e-33 146.7 273 66.7
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 2.5e-33 146.7 285 65.3
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 4.2e-33 146.0 260 65.0
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 5.5e-33 145.6 269 68.8
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 5.5e-33 145.6 261 72.4
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 7.2e-33 145.2 284 63.0
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 9.3e-33 144.8 318 59.1
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 1.6e-32 144.1 284 59.5
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 4.6e-32 142.5 276 63.0
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 7.9e-32 141.7 270 67.0
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 1.0e-31 141.4 272 65.1
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 1.0e-31 141.4 281 64.1
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 1.0e-31 141.4 283 61.5
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 1.8e-31 140.6 281 64.4
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 1.8e-31 140.6 281 63.7
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 3.0e-31 139.8 258 50.0
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 3.9e-31 139.4 284 66.2
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 3.9e-31 139.4 280 59.6
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 8.8e-31 138.3 275 63.6
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 1.1e-30 137.9 279 56.3
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 1.9e-30 137.1 281 67.3
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 3.3e-30 136.3 149 70.5
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 3.3e-30 136.3 284 39.4
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 4.3e-30 136.0 283 53.7
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 5.7e-30 135.6 274 47.1
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 7.4e-30 135.2 275 60.4
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 9.7e-30 134.8 242 71.1
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 1.3e-29 134.4 100 74.0
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 1.3e-29 134.4 100 74.0
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 1.3e-29 134.4 283 54.4
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.7e-29 134.0 282 54.3
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 1.7e-29 134.0 286 65.7
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 1.7e-29 134.0 280 53.6
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.8e-29 133.3 149 73.8
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 2.8e-29 133.3 270 64.4
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 3.7e-29 132.9 282 54.3
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 8.2e-29 131.7 278 61.9
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 8.2e-29 131.7 293 50.9
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 1.1e-28 131.3 288 62.2
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 2.4e-28 130.2 276 62.0
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 4.1e-28 129.4 153 79.1
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 9.1e-28 128.3 128 71.9
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 1.2e-27 127.9 277 61.7
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 1.5e-27 127.5 154 54.5
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.0e-27 127.1 238 58.4
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 5.9e-27 125.6 103 69.9
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 5.9e-27 125.6 284 57.0
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 3.8e-26 122.9 254 58.3
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 2.5e-25 120.2 102 65.7
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 3.2e-25 119.8 289 51.6
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 4.2e-25 119.4 281 62.3
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 4.2e-25 119.4 277 58.8
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 9.4e-25 118.2 103 63.1
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 2.7e-24 116.7 102 72.5
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 3.6e-24 116.3 102 72.5
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 1.0e-23 114.8 104 66.3
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 1.0e-23 114.8 102 70.6
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 6.7e-23 112.1 282 54.6
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 7.4e-22 108.6 225 66.2
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.3e-21 107.8 238 60.5
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 2.4e-20 103.6 101 61.4
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 2.4e-20 103.6 101 61.4
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 2.2e-18 97.1 102 60.8
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 3.6e-16 89.7 105 46.7
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 3.6e-16 89.7 105 46.7
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 3.6e-16 89.7 112 44.6
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 6.1e-16 89.0 158 62.7
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 5.3e-12 75.9 101 53.5
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 1.7e-10 70.9 101 53.5
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 2.2e-10 70.5 265 34.7
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.1e-09 68.2 102 49.0
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 1.5e-09 67.8 110 48.2
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 4.7e-08 62.8 49 53.1
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 1.0e-07 61.6 38 63.2
Dinv24556 Davidia involucrata HOM05D000368 ORTHO05D009348 2.0e-06 57.4 158 57.0
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 4.4e-06 56.2 28 75.0


User provided reference genes

Program Settings