Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 2.7e-74 282.0 144 100.0
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 8.8e-70 266.9 144 93.8
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 6.3e-68 260.8 144 91.7
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 1.1e-67 260.0 142 90.8
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 2.4e-67 258.8 142 88.0
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 2.7e-66 255.4 142 89.4
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 7.7e-66 253.8 142 85.9
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 2.3e-65 252.3 142 90.1
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.9e-65 251.9 142 86.6
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 2.9e-65 251.9 142 86.6
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 2.9e-65 251.9 142 87.3
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 3.8e-65 251.5 143 88.8
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 8.6e-65 250.4 142 87.3
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.1e-64 250.0 142 87.3
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.5e-64 248.8 132 96.2
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.5e-64 248.8 143 88.1
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 3.3e-64 248.4 142 87.3
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 3.3e-64 248.4 142 88.7
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 4.2e-64 248.1 142 86.6
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 7.2e-64 247.3 144 87.5
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 9.5e-64 246.9 143 87.4
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 9.5e-64 246.9 143 87.4
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 1.2e-63 246.5 142 86.6
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.2e-63 246.5 144 87.5
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 2.1e-63 245.7 143 86.0
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 4.7e-63 244.6 132 93.9
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 8.0e-63 243.8 203 68.0
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 8.0e-63 243.8 143 86.7
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 1.0e-62 243.4 142 86.6
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 1.0e-62 243.4 144 86.1
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 1.0e-62 243.4 143 85.3
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.3e-62 242.3 142 86.6
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.3e-62 242.3 142 87.3
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 3.0e-62 241.9 142 84.5
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 4.0e-62 241.5 144 85.4
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 5.2e-62 241.1 142 85.2
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 5.2e-62 241.1 155 78.7
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 6.8e-62 240.7 140 84.3
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 2.0e-61 239.2 142 85.9
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 4.4e-61 238.0 144 83.3
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 4.4e-61 238.0 143 83.9
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 7.5e-61 237.3 141 83.7
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 1.3e-60 236.5 143 84.6
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 1.3e-60 236.5 142 83.1
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 1.7e-60 236.1 143 83.2
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 1.7e-60 236.1 142 83.8
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 1.7e-60 236.1 142 84.5
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 2.2e-60 235.7 143 82.5
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.8e-60 235.3 142 83.1
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 2.8e-60 235.3 142 84.5
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 3.7e-60 235.0 142 83.1
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 4.9e-60 234.6 142 83.1
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 4.9e-60 234.6 142 83.1
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 6.3e-60 234.2 141 83.0
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 8.3e-60 233.8 143 82.5
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 8.3e-60 233.8 143 82.5
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 1.1e-59 233.4 143 83.9
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 1.4e-59 233.0 143 85.3
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 1.4e-59 233.0 143 82.5
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 1.4e-59 233.0 143 82.5
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 1.4e-59 233.0 143 82.5
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 1.8e-59 232.6 143 84.6
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.8e-59 232.6 130 88.5
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 2.4e-59 232.3 143 85.3
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 3.1e-59 231.9 142 82.4
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 4.1e-59 231.5 143 81.8
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 81.8
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 81.8
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 5.4e-59 231.1 132 86.4
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 82.5
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 7.0e-59 230.7 143 81.8
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 7.0e-59 230.7 143 81.1
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 7.0e-59 230.7 143 81.8
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 7.0e-59 230.7 145 85.5
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 9.2e-59 230.3 143 81.8
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 1.2e-58 229.9 143 81.1
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.2e-58 229.9 144 79.9
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.6e-58 229.6 143 81.1
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 1.6e-58 229.6 143 81.8
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 2.0e-58 229.2 143 80.4
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 2.7e-58 228.8 143 81.1
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 7.8e-58 227.3 130 86.9
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.7e-57 226.1 143 80.4
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 2.3e-57 225.7 143 80.4
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.9e-57 225.3 143 82.5
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 2.9e-57 225.3 143 82.5
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 3.8e-57 224.9 143 80.4
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 3.8e-57 224.9 142 83.1
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.0e-57 224.6 144 84.0
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 6.6e-57 224.2 144 82.6
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 2.5e-56 222.2 144 80.6
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.6e-56 221.1 143 81.8
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 7.3e-56 220.7 147 83.0
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 7.3e-56 220.7 147 83.0
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.2e-55 219.9 143 82.5
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 1.6e-55 219.5 142 81.7
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.6e-55 219.5 142 81.0
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 1.6e-55 219.5 144 79.9
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 2.1e-55 219.2 147 79.6
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 2.8e-55 218.8 121 87.6
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 2.8e-55 218.8 144 81.2
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 2.8e-55 218.8 147 81.6
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 3.6e-55 218.4 142 80.3
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 3.6e-55 218.4 142 81.0
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 6.1e-55 217.6 144 80.6
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.0e-54 216.9 143 80.4
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.4e-54 216.5 144 80.6
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 1.8e-54 216.1 142 78.2
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 2.3e-54 215.7 144 79.2
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 1.2e-53 213.4 142 80.3
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 2.0e-53 212.6 143 79.0
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 4.4e-53 211.5 144 77.1
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.3e-52 209.9 129 86.8
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.9e-52 208.8 144 78.5
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 4.9e-52 208.0 144 76.4
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 1.1e-51 206.8 144 74.3
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 2.4e-51 205.7 142 77.5
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.6e-50 203.0 143 76.9
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.6e-50 203.0 152 74.3
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 2.0e-50 202.6 134 82.1
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 3.5e-50 201.8 132 81.8
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 6.0e-50 201.1 144 76.4
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 7.8e-50 200.7 143 78.3
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 7.8e-50 200.7 143 78.3
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 7.8e-50 200.7 143 78.3
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 150 73.3
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 2.3e-49 199.1 180 64.4
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 3.9e-49 198.4 142 78.2
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 1.5e-48 196.4 143 74.8
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.9e-48 196.1 141 73.8
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 2.5e-48 195.7 142 75.4
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 5.6e-48 194.5 167 68.9
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 1.2e-47 193.4 145 73.1
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 4.7e-47 191.4 120 82.5
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 4.7e-47 191.4 145 72.4
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 4.0e-46 188.3 146 73.3
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.4e-45 185.3 131 77.1
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 5.8e-45 184.5 141 73.0
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 2.9e-44 182.2 142 71.8
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.1e-43 180.3 92 94.6
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 3.2e-43 178.7 121 80.2
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 5.4e-43 177.9 131 77.1
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.2e-42 176.8 144 69.4
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 2.1e-42 176.0 143 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 4.6e-42 174.9 145 68.3
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.6e-42 174.9 115 79.1
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 1.0e-41 173.7 140 70.7
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.7e-41 172.9 136 76.5
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.0e-41 172.2 122 79.5
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 3.9e-41 171.8 95 88.4
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 6.6e-41 171.0 148 68.2
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.5e-40 169.9 144 66.7
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 5.6e-40 167.9 133 72.2
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 7.3e-40 167.5 124 75.0
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 2.1e-39 166.0 130 68.5
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 6.8e-38 161.0 144 67.4
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 2.6e-37 159.1 87 89.7
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 3.4e-37 158.7 113 78.8
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 3.7e-36 155.2 98 80.6
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 1.6e-34 149.8 122 72.1
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 4.6e-34 148.3 111 70.3
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 1.3e-33 146.7 103 77.7
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 7.3e-32 141.0 85 78.8
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 1.3e-28 130.2 131 58.8
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 6.4e-28 127.9 120 63.3
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 6.4e-28 127.9 120 63.3
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 8.4e-28 127.5 133 56.4
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.4e-27 126.7 106 71.7
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 9.2e-27 124.0 99 73.7
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.6e-26 123.2 146 54.8
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 7.8e-26 120.9 69 82.6
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 8.7e-25 117.5 132 53.0
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.5e-24 116.7 62 88.7
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 1.9e-24 116.3 132 54.5
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 3.3e-24 115.5 80 75.0
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 2.8e-23 112.5 77 74.0
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 3.6e-23 112.1 76 75.0
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 9.9e-21 104.0 81 71.6
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 5.4e-19 98.2 101 57.4
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 9.6e-16 87.4 76 68.4
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 3.0e-09 65.9 35 94.3


User provided reference genes

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