Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.6e-106 388.7 188 100.0
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.2e-105 385.6 188 99.5
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 4.8e-100 367.9 188 92.0
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.1e-99 366.7 188 92.0
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 92.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.3e-97 359.8 188 91.5
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-97 359.4 188 91.5
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-97 358.6 188 91.0
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.8e-97 358.2 188 89.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 3.8e-97 358.2 188 91.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 6.5e-97 357.5 188 90.4
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.4e-96 356.3 188 90.4
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.9e-96 355.9 188 89.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.2e-95 353.2 188 89.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.2e-95 353.2 188 89.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.6e-95 352.8 188 87.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.6e-95 352.8 188 89.4
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 88.8
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.4e-94 349.7 188 86.2
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 8.8e-94 347.1 188 87.2
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 8.8e-94 347.1 188 87.2
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.0e-93 345.9 187 88.2
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.2
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 86.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 87.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.7
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 87.8
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 86.7
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 86.2
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 86.2
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 86.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.6
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.7e-92 341.7 179 90.5
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 86.2
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 86.2
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 86.2
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 86.7
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 85.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 85.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 85.6
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.6
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 2.4e-91 339.0 186 84.9
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.6
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.6
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 85.6
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 83.5
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 85.1
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 4.1e-91 338.2 186 84.9
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 85.1
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.0
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.1
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 86.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 85.1
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.2e-90 336.7 186 84.4
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-90 336.3 190 85.3
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-90 336.3 190 85.3
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 83.5
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 83.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.5e-90 336.3 186 83.3
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.5e-90 336.3 186 83.3
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 84.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 85.1
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 85.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 85.1
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 85.1
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 85.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 84.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.3e-89 333.2 186 82.8
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 83.5
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.5
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 83.5
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 83.5
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 83.5
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.5
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 81.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 84.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.0
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 83.5
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 83.5
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 83.5
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.9
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 83.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.0
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 82.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.9
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.4
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.6e-85 318.9 174 87.9
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 4.4e-85 318.2 180 83.9
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 81.9
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 6.3e-84 314.3 169 86.4
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.3
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 78.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 78.2
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 79.8
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 78.7
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 78.2
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 78.2
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.6e-82 309.7 189 78.8
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 77.7
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 78.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 77.1
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.1
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 78.3
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.5e-80 303.1 180 78.3
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 78.8
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.5e-80 303.1 188 78.7
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 77.2
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 8.0e-79 297.4 189 77.8
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 76.6
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 74.5
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 77.8
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 75.3
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 3.3e-77 292.0 188 75.5
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 74.7
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.9e-73 278.9 188 70.7
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.8e-73 278.5 188 70.7
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.8e-73 278.5 188 70.7
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 8.5e-73 277.3 188 69.7
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.5e-72 276.6 188 73.9
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 73.9
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.6e-71 271.9 188 73.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 6.1e-71 271.2 179 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 8.0e-71 270.8 188 65.4
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.8e-70 269.6 179 73.2
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.8e-70 269.6 177 75.1
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 5.7e-69 264.6 189 66.7
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 66.3
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 3.1e-67 258.8 187 66.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 7.7e-66 254.2 181 69.6
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.3e-65 252.7 187 63.1
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 4.7e-63 245.0 188 60.6
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.0e-62 243.8 165 75.8
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.8e-59 233.0 177 62.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.8e-54 216.5 188 60.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 9.5e-48 194.1 187 49.7
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 8.0e-47 191.0 121 75.2
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-45 187.2 173 60.1
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 5.8e-45 184.9 109 79.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.9e-44 182.6 115 74.8
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.9e-44 181.8 188 54.8
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 4.6e-42 175.3 123 73.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.1e-39 166.4 85 91.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.9e-36 156.0 127 59.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 4.7e-31 138.7 78 83.3
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.2e-26 124.0 92 68.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 4.7e-23 112.1 64 79.7
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 5.4e-11 72.0 35 94.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 6.2e-07 58.5 39 69.2


User provided reference genes

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