Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 4.7e-123 444.5 219 100.0
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.7e-117 426.0 234 90.6
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 5.0e-117 424.5 219 93.6
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 2.7e-110 402.1 204 95.1
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 4.9e-104 381.3 217 84.3
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 6.4e-104 380.9 217 85.7
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 4.1e-103 378.3 219 84.0
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 9.2e-103 377.1 219 83.1
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 1.2e-102 376.7 215 84.7
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 2.1e-102 375.9 214 85.0
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 2.7e-102 375.6 219 81.3
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 6.0e-102 374.4 219 82.6
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 1.0e-101 373.6 219 81.7
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.3e-101 373.2 213 85.9
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.3e-101 372.5 219 81.3
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 3.9e-101 371.7 205 88.8
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 5.1e-101 371.3 213 83.6
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 6.6e-101 370.9 217 82.5
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 6.6e-101 370.9 219 82.6
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 6.6e-101 370.9 213 83.1
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 6.6e-101 370.9 219 81.3
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 1.9e-100 369.4 219 82.2
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 2.5e-100 369.0 219 81.7
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 3.3e-100 368.6 212 83.5
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 3.3e-100 368.6 220 81.4
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 7.3e-100 367.5 212 82.5
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 7.3e-100 367.5 215 81.4
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 7.3e-100 367.5 215 81.4
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 1.6e-99 366.3 215 83.7
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 2.1e-99 365.9 217 82.5
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 2.1e-99 365.9 216 84.3
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 2.1e-99 365.9 215 81.9
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 4.7e-99 364.8 219 79.0
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 8.1e-99 364.0 215 80.9
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 8.1e-99 364.0 217 80.6
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 1.8e-98 362.8 215 80.5
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 1.8e-98 362.8 217 80.2
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 3.1e-98 362.1 217 80.2
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 3.1e-98 362.1 217 79.7
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 6.8e-98 360.9 217 81.1
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 6.8e-98 360.9 217 78.3
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.2e-97 360.1 217 78.3
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 2.0e-97 359.4 212 80.2
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 80.6
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 80.6
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 2.6e-97 359.0 214 82.2
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 3.4e-97 358.6 217 80.6
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 4.4e-97 358.2 216 82.4
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 9.9e-97 357.1 217 78.8
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 1.3e-96 356.7 215 80.0
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.3e-96 356.7 212 79.2
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.7e-96 356.3 217 78.3
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.9e-96 355.5 217 78.3
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 3.7e-96 355.1 217 78.3
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 8.4e-96 354.0 220 78.6
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 1.4e-95 353.2 219 78.5
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.4e-95 353.2 219 82.2
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 1.9e-95 352.8 209 80.9
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 1.9e-95 352.8 218 80.3
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 2.4e-95 352.4 222 78.4
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 2.4e-95 352.4 218 78.0
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 3.2e-95 352.1 212 78.3
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 4.1e-95 351.7 219 76.7
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 5.4e-95 351.3 222 78.4
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 5.4e-95 351.3 214 79.9
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 1.6e-94 349.7 221 77.8
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 2.1e-94 349.4 220 78.2
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.5e-94 348.6 220 76.8
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 3.5e-94 348.6 220 79.1
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 7.8e-94 347.4 219 75.8
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.0e-93 347.1 212 77.4
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 1.0e-93 347.1 220 76.4
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 1.7e-93 346.3 218 77.5
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 3.0e-93 345.5 219 76.7
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 3.9e-93 345.1 219 76.7
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 3.9e-93 345.1 219 77.2
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 5.1e-93 344.7 219 76.7
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 5.1e-93 344.7 219 76.7
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 8.6e-93 344.0 219 76.7
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 8.6e-93 344.0 219 76.7
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 1.1e-92 343.6 222 77.0
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 3.3e-92 342.0 213 75.6
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 8.1e-91 337.4 217 74.7
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 1.4e-90 336.7 209 76.1
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 5.2e-90 334.7 212 76.9
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 5.2e-90 334.7 212 76.9
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 4.2e-87 325.1 214 74.8
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 2.1e-86 322.8 201 77.1
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.7e-85 319.7 212 72.6
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 3.9e-85 318.5 213 76.1
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.1e-84 317.0 222 73.0
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 5.3e-82 308.1 216 69.4
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 2.6e-81 305.8 204 70.6
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 3.8e-80 302.0 216 69.0
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 4.9e-80 301.6 205 71.7
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 4.2e-79 298.5 195 76.4
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 1.2e-78 297.0 215 69.8
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 3.0e-77 292.4 219 68.0
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 5.6e-76 288.1 192 75.5
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.4e-74 283.5 184 70.1
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 6.9e-74 281.2 206 64.6
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.8e-72 275.4 199 67.3
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 3.9e-69 265.4 192 66.1
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 1.4e-66 256.9 149 81.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.1e-66 255.8 144 84.0
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.0e-66 255.4 263 54.4
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.2e-65 253.8 150 82.0
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 1.4e-63 246.9 147 81.0
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 2.0e-57 226.5 147 72.8
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 2.9e-56 222.6 180 57.2
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 1.8e-50 203.4 192 50.5
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.0e-45 187.6 103 85.4
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 1.0e-37 161.0 205 46.3
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 6.3e-27 125.2 93 64.5
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 1.2e-25 120.9 66 84.8
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.7e-25 119.8 85 67.1
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 4.2e-23 112.5 97 57.7
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 5.5e-23 112.1 67 76.1
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 1.6e-22 110.5 87 60.9
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 2.2e-16 90.1 143 42.0
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 1.9e-15 87.0 67 59.7
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 2.0e-09 67.0 41 68.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 4.5e-09 65.9 166 28.3
MELO3C013239.2 Cucumis melo HOM05D000031 ORTHO05D000030 1.5e-07 60.8 38 71.1
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 4.3e-07 59.3 196 25.5
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.3e-07 59.3 142 30.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.3e-07 59.3 142 30.3
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 4.3e-07 59.3 142 30.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 4.3e-07 59.3 142 30.3
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 4.3e-07 59.3 142 30.3
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.6e-07 58.9 196 25.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 5.6e-07 58.9 196 25.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.6e-07 58.9 142 28.2
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.2e-06 57.8 196 25.0
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.2e-06 57.8 163 28.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.2e-06 57.8 163 28.2
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 29.6
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.6e-06 56.2 142 28.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.6e-06 56.2 142 28.2
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 4.7e-06 55.8 142 26.8
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 6.1e-06 55.5 158 25.9
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 6.1e-06 55.5 142 27.5
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 8.0e-06 55.1 142 26.8


User provided reference genes

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