Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 3.0e-257 891.3 458 100.0
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.4e-254 882.5 458 99.1
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.5e-240 835.9 458 94.1
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 2.0e-232 808.9 458 91.0
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 8.7e-212 740.3 466 82.6
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 3.1e-209 731.9 466 82.2
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 4.9e-207 724.5 466 80.5
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 2.4e-206 722.2 464 80.4
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 5.4e-206 721.1 471 80.7
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 4.6e-205 718.0 464 80.0
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 3.9e-204 714.9 466 78.3
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 8.7e-204 713.8 466 80.0
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.1e-201 706.8 466 78.5
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 1.4e-201 706.4 468 78.8
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.8e-201 706.1 460 78.0
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 2.6e-200 702.2 466 78.8
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 4.5e-200 701.4 460 79.8
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 5.8e-200 701.0 465 78.5
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 9.9e-200 700.3 466 78.3
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 3.8e-199 698.4 466 76.6
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 6.4e-199 697.6 464 77.2
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.9e-198 696.0 467 77.7
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 2.4e-198 695.7 466 78.1
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 4.2e-198 694.9 466 77.9
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 1.6e-197 693.0 467 77.7
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 3.5e-197 691.8 466 76.8
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.0e-197 691.0 489 75.5
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.3e-196 689.1 458 76.9
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 3.9e-196 688.3 466 75.8
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 3.9e-196 688.3 465 75.7
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 5.1e-196 688.0 425 82.4
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 8.7e-196 687.2 466 76.6
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 1.1e-195 686.8 466 77.0
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.9e-195 686.0 455 78.7
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 4.3e-195 684.9 465 76.3
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 7.4e-195 684.1 416 83.4
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 7.4e-195 684.1 466 76.0
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.6e-194 682.9 425 81.9
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 2.1e-194 682.6 466 76.4
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 2.8e-194 682.2 466 75.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 6.2e-194 681.0 466 76.8
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 8.1e-194 680.6 466 76.4
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 8.1e-194 680.6 466 75.3
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.1e-193 680.2 466 74.9
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 3.1e-193 678.7 466 76.0
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 4.0e-193 678.3 466 76.4
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 6.9e-193 677.6 460 76.5
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 9.0e-193 677.2 458 76.2
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.2e-192 676.8 466 76.8
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 1.5e-192 676.4 461 74.4
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 1.5e-192 676.4 461 74.4
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 1.5e-192 676.4 461 74.4
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 2.0e-192 676.0 463 73.7
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.6e-192 675.6 465 75.9
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 4.5e-192 674.9 462 74.7
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 5.8e-192 674.5 467 75.2
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 7.6e-192 674.1 465 75.7
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 1.3e-191 673.3 466 75.8
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 3.8e-191 671.8 462 74.2
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 3.8e-191 671.8 481 72.3
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 3.8e-191 671.8 458 75.3
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 4.9e-191 671.4 468 74.6
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 1.1e-190 670.2 464 73.5
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 1.1e-190 670.2 463 73.9
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.4e-190 669.8 466 74.2
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 1.9e-190 669.5 469 74.0
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 3.2e-190 668.7 463 73.4
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 9.3e-190 667.2 463 74.1
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.6e-189 666.4 461 73.3
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 3.5e-189 665.2 464 73.9
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.5e-189 665.2 493 69.8
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.3e-188 663.3 470 74.5
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.8e-188 662.9 463 73.0
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 3.9e-188 661.8 468 73.5
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 3.9e-188 661.8 445 76.0
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 1.9e-187 659.4 466 75.5
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.9e-187 659.4 460 73.7
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 3.3e-187 658.7 466 73.6
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 4.3e-187 658.3 511 69.5
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 4.3e-187 658.3 469 71.6
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 5.7e-187 657.9 463 71.9
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 9.6e-187 657.1 460 73.9
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 1.3e-186 656.8 466 72.5
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.6e-186 656.4 468 73.1
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.6e-186 656.4 471 73.5
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.7e-186 655.2 469 73.1
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 3.7e-186 655.2 462 73.6
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 1.1e-185 653.7 465 73.5
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 4.1e-185 651.7 465 73.3
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 3.4e-184 648.7 471 71.1
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.0e-183 647.1 466 73.2
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 2.2e-183 646.0 458 72.1
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.9e-183 645.6 488 70.1
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 8.5e-183 644.0 465 73.5
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.4e-182 643.3 461 71.8
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.2e-181 640.2 465 72.5
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.7e-178 628.6 465 69.7
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.4e-177 626.7 405 76.0
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 6.9e-177 624.4 416 75.7
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 2.6e-176 622.5 414 75.1
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 3.4e-176 622.1 459 69.9
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 6.5e-175 617.8 465 68.6
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.7e-173 612.5 448 68.3
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 6.7e-172 607.8 398 75.6
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 9.1e-169 597.4 451 66.1
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 3.6e-165 585.5 415 73.5
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 6.1e-165 584.7 465 65.4
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 6.1e-165 584.7 457 66.5
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 3.0e-164 582.4 418 69.1
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 8.2e-162 574.3 391 75.2
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.5e-142 510.4 381 70.9
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 9.8e-139 497.7 320 79.1
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 9.8e-139 497.7 400 62.8
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.5e-131 473.8 401 60.1
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 3.7e-130 469.2 466 54.3
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.6e-115 419.9 454 51.8
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 2.5e-102 376.7 286 65.7
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 6.2e-101 372.1 408 52.5
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 3.5e-96 356.3 551 38.7
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 2.2e-90 337.0 263 68.4
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 8.7e-79 298.5 188 78.2
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 5.5e-73 279.3 272 57.4
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 7.9e-64 248.8 252 57.1
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.0e-63 248.4 252 57.1
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.6e-56 224.6 207 62.8
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 8.8e-47 192.2 145 68.3
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.6e-43 180.6 163 60.7
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 7.7e-43 179.1 148 64.2
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 8.5e-42 175.6 124 78.2
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 6.3e-37 159.5 126 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 4.7e-32 143.3 370 30.5
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.6e-24 118.2 60 93.3
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 5.6e-17 93.2 59 72.9
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.2e-16 92.0 57 78.9
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 1.4e-15 88.6 70 68.6
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 2.5e-09 67.8 67 56.7


User provided reference genes

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