Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 2.8e-167 592.0 335 100.0
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 5.6e-160 567.8 371 89.2
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 8.8e-129 464.2 338 82.2
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.2e-123 445.7 340 77.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 7.2e-123 444.5 342 78.1
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 2.1e-122 443.0 337 78.0
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 5.7e-120 434.9 342 76.3
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 3.7e-119 432.2 335 77.0
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 9.1e-118 427.6 328 77.7
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 7.7e-117 424.5 335 77.0
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.2e-116 422.9 349 73.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 8.5e-116 421.0 360 71.1
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.9e-115 419.9 339 76.7
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 3.2e-115 419.1 351 72.9
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 4.2e-115 418.7 351 74.4
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 3.6e-114 415.6 345 74.2
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 4.0e-113 412.1 341 73.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 8.8e-113 411.0 340 77.4
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 7.5e-112 407.9 336 72.6
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.8e-111 406.0 340 71.2
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 8.2e-111 404.4 294 79.6
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.6e-109 400.2 341 71.3
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 5.9e-109 398.3 349 71.6
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 5.9e-109 398.3 340 71.5
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-107 394.0 340 75.3
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.1e-107 394.0 341 71.6
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.1e-107 394.0 347 70.0
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 4.2e-107 392.1 290 79.0
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 9.4e-107 391.0 339 70.5
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.6e-106 390.2 335 72.2
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.6e-106 390.2 345 71.3
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 6.1e-106 388.3 341 70.1
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 2.3e-105 386.3 342 71.6
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.3e-105 386.3 350 69.1
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.0e-105 385.6 349 69.1
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 7.5e-104 381.3 312 74.0
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 3.7e-103 379.0 337 72.1
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.1e-102 375.6 297 76.1
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 3.5e-101 372.5 334 70.7
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 4.5e-101 372.1 338 69.5
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.1e-99 367.5 339 69.3
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.5e-99 367.1 350 66.6
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.5e-99 367.1 324 71.0
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-99 366.3 288 74.7
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 2.5e-99 366.3 325 70.2
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.6e-98 363.6 342 67.0
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.7e-98 362.1 292 73.3
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 8.0e-98 361.3 341 68.6
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.0e-96 356.7 322 68.3
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 3.4e-96 355.9 333 68.8
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 4.9e-95 352.1 347 65.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.5e-91 340.5 374 60.4
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 4.3e-91 339.0 295 71.9
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 7.3e-91 338.2 373 59.2
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 7.3e-91 338.2 283 71.7
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.1e-90 336.7 293 71.0
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.6e-90 335.9 352 65.3
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 4.7e-90 335.5 271 70.8
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.4e-89 334.0 373 58.7
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.4e-89 334.0 341 64.8
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 8.9e-89 331.3 307 66.4
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 3.4e-88 329.3 297 68.7
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 6.4e-87 325.1 342 60.5
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-86 323.9 304 64.8
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.4e-86 323.9 340 62.9
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.2e-86 322.8 338 64.5
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 4.1e-86 322.4 327 62.1
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 4.1e-86 322.4 260 73.8
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 5.4e-86 322.0 304 64.5
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.2e-86 321.2 334 63.2
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 9.2e-86 321.2 303 65.7
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.2e-85 320.9 352 59.7
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.6e-85 320.5 242 76.0
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.0e-85 320.1 300 66.0
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 5.9e-85 318.5 302 66.9
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.3e-84 316.6 354 59.6
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 8.6e-84 314.7 311 64.0
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 1.5e-83 313.9 354 61.3
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.9e-83 313.5 342 60.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.5e-83 313.2 340 60.3
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 9.5e-83 311.2 330 63.0
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.6e-82 309.3 342 58.5
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 2.0e-80 303.5 302 62.3
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.4e-78 296.6 303 63.7
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 9.2e-78 294.7 363 56.5
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.6e-77 293.9 290 63.4
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.6e-77 293.9 273 67.8
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.6e-77 292.4 339 61.4
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.3e-76 290.0 343 57.7
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.3e-76 290.0 343 57.7
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.0e-76 289.7 340 58.2
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 6.6e-76 288.5 334 61.4
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 8.6e-76 288.1 342 57.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 8.6e-76 288.1 342 57.6
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.3e-75 286.2 218 76.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 4.3e-75 285.8 372 53.5
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.6e-74 283.9 363 55.1
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 2.1e-74 283.5 342 56.4
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 4.7e-74 282.3 364 54.1
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.8e-73 278.5 212 73.1
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.6e-72 276.6 329 57.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 9.9e-72 274.6 296 61.8
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.3e-71 274.2 334 56.6
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 4.9e-71 272.3 297 59.3
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.4e-70 270.8 353 54.7
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 2.3e-68 263.5 346 52.3
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.0e-68 263.1 315 55.9
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 5.6e-67 258.8 198 70.7
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.8e-66 256.5 338 53.0
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 8.1e-66 255.0 202 69.3
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 8.1e-66 255.0 202 69.3
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 8.9e-65 251.5 231 63.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.7e-63 247.3 256 60.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 6.2e-58 228.8 383 48.0
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 2.4e-57 226.9 278 54.7
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.2e-56 224.6 243 57.6
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.0e-56 223.8 343 50.4
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 3.8e-55 219.5 479 38.4
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 5.4e-54 215.7 336 47.6
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-53 214.2 339 47.8
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 7.8e-53 211.8 339 49.0
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.0e-52 211.5 330 50.3
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.3e-52 211.1 351 44.4
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 2.3e-52 210.3 276 51.8
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 8.7e-52 208.4 349 45.0
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.1e-51 208.0 191 69.1
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 5.6e-51 205.7 161 71.4
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.5e-48 197.6 204 64.2
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.5e-48 197.6 346 46.8
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 3.4e-48 196.4 296 50.7
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.8e-44 184.1 279 45.9
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 3.9e-44 183.0 145 71.7
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.9e-43 180.6 310 43.2
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.3e-28 131.3 208 50.5
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 8.2e-26 122.1 142 50.0
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.9e-24 115.9 173 44.5
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 6.1e-21 105.9 97 64.9
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.7e-15 87.8 87 59.8
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 1.1e-14 85.1 98 61.2
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 9.1e-09 65.5 165 33.3
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 9.1e-09 65.5 56 64.3
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.2e-07 60.8 121 52.1
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 3.8e-07 60.1 58 63.8
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 8.5e-07 58.9 199 29.1


User provided reference genes

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