Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 0.0e+00 1211.1 593 100.0
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 0.0e+00 1187.9 593 97.6
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 0.0e+00 1116.3 632 87.8
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 0.0e+00 1107.8 593 91.6
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 6.0e-290 1000.3 592 79.9
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.0e-289 999.6 593 79.8
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 3.6e-287 991.1 597 79.2
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 4.5e-285 984.2 596 79.2
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 1.2e-282 976.1 593 78.4
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 3.0e-281 971.5 593 77.6
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.9e-280 968.8 593 78.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 9.6e-280 966.5 596 78.5
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.7e-279 964.5 593 78.4
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 9.0e-278 959.9 594 77.6
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 4.5e-277 957.6 593 76.6
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.9e-276 954.9 593 75.9
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 2.5e-275 951.8 593 76.4
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 5.5e-275 950.7 593 76.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 2.7e-274 948.3 597 77.4
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 2.7e-274 948.3 593 76.2
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.9e-273 944.5 593 76.9
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 3.7e-271 937.9 601 74.5
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 1.8e-270 935.6 593 75.9
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 2.4e-270 935.3 593 75.0
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 2.6e-269 931.8 594 75.8
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.0e-268 929.9 594 75.3
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 3.8e-268 927.9 595 75.1
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 5.5e-267 924.1 581 76.4
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 7.2e-267 923.7 596 74.8
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.1e-264 916.4 592 74.0
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 2.8e-263 911.8 598 73.2
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 9.1e-262 906.7 633 69.7
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 1.5e-261 906.0 593 73.4
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 4.5e-261 904.4 592 74.0
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 2.2e-260 902.1 594 73.4
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 5.0e-260 901.0 593 72.7
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 1.1e-259 899.8 630 70.5
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.9e-259 899.0 595 73.6
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.2e-259 897.9 595 72.4
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 2.1e-258 895.6 595 72.4
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 2.1e-258 895.6 593 72.5
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 4.6e-258 894.4 593 72.3
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 2.3e-257 892.1 596 72.7
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 6.7e-257 890.6 595 72.1
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 8.8e-257 890.2 669 67.1
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 1.7e-255 885.9 554 77.4
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 4.8e-255 884.4 603 71.6
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 9.1e-254 880.2 594 73.4
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 7.7e-253 877.1 615 69.8
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 9.4e-251 870.2 547 77.5
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 6.7e-249 864.0 595 71.1
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 4.8e-247 857.8 646 66.6
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 2.6e-245 852.0 579 69.8
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 1.0e-244 850.1 597 69.3
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.0e-244 850.1 595 69.7
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 1.5e-243 846.3 590 70.3
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.9e-243 845.9 595 69.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 2.3e-241 839.0 593 67.5
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.2e-240 836.6 594 70.2
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 9.7e-240 833.6 597 68.2
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 7.0e-238 827.4 595 69.1
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 2.7e-237 825.5 534 74.5
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 5.9e-237 824.3 594 67.0
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 7.7e-237 823.9 596 68.1
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.5e-235 819.7 594 66.7
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.9e-235 819.3 546 72.7
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.4e-233 813.1 595 65.7
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 2.8e-231 805.4 595 65.0
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 6.3e-231 804.3 602 66.3
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 8.3e-231 803.9 585 68.5
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 7.0e-230 800.8 652 62.6
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 3.2e-227 792.0 528 73.5
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 4.2e-227 791.6 593 64.9
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 2.1e-226 789.3 593 66.9
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 8.0e-226 787.3 595 63.7
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 3.4e-224 781.9 530 70.8
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 1.3e-223 780.0 577 67.1
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.8e-222 776.2 596 63.9
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 7.0e-222 774.2 598 63.9
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 9.2e-222 773.9 688 58.6
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 3.5e-221 771.9 599 66.1
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 4.5e-221 771.5 596 63.8
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 5.6e-219 764.6 592 62.7
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 3.6e-218 761.9 601 65.4
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.0e-217 760.4 518 72.4
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.0e-217 760.4 594 62.5
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.4e-217 760.0 597 63.3
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 5.2e-217 758.1 596 63.3
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.2e-216 756.9 509 72.1
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 4.9e-215 751.5 599 62.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.8e-214 749.6 484 74.6
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 5.4e-214 748.0 573 66.1
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 1.1e-209 733.8 595 61.0
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 2.3e-209 732.6 616 60.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 8.6e-204 714.1 556 62.2
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.9e-175 619.4 531 59.9
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 2.1e-157 560.1 379 70.4
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 2.6e-144 516.5 609 46.5
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.6e-144 516.5 399 64.2
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 3.5e-128 463.0 453 52.3
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 9.7e-123 444.9 599 42.4
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 3.1e-121 439.9 516 47.9
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 5.9e-104 382.5 245 74.7
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 1.1e-86 325.1 205 76.1
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.9e-86 324.3 287 58.5
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.0e-79 302.0 251 57.0
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-76 290.4 617 34.2
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 9.0e-60 235.7 175 62.9
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.6e-48 198.4 161 61.5
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.5e-41 173.3 129 65.1
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 2.0e-35 154.8 110 74.5
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 3.4e-35 154.1 120 57.5
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 7.9e-32 142.9 81 80.2
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 1.2e-24 119.0 65 78.5
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 2.6e-19 101.3 83 59.0
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 2.7e-16 91.3 315 24.4
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 1.5e-14 85.5 52 78.8
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-11 75.9 64 60.9
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 5.0e-10 70.5 44 68.2
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 7.2e-09 66.6 55 50.9
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.6e-08 65.5 32 93.8
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 2.7e-08 64.7 73 46.6
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 6.1e-08 63.5 380 23.4
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 6.8e-07 60.1 360 22.5
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 8.8e-07 59.7 61 50.8
Eucgr.H03129 Eucalyptus grandis HOM05D006440 ORTHO05D003987 4.4e-06 57.4 116 36.2
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 7.5e-06 56.6 358 22.3
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 9.7e-06 56.2 397 22.9


User provided reference genes

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