Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 7.3e-275 949.9 467 100.0
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 7.4e-259 896.7 540 85.0
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 1.8e-252 875.5 533 83.5
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 2.5e-238 828.6 535 78.9
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 6.6e-199 697.6 537 66.7
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 1.6e-197 693.0 545 67.2
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 8.0e-197 690.6 537 66.3
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 1.4e-196 689.9 537 66.5
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 3.1e-196 688.7 446 76.2
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 4.0e-196 688.3 534 67.4
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 4.0e-196 688.3 536 65.7
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 1.2e-195 686.8 539 66.4
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 5.8e-195 684.5 448 76.3
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 7.5e-195 684.1 445 76.9
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 1.3e-194 683.3 544 65.1
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 4.9e-194 681.4 561 63.5
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 8.3e-194 680.6 534 66.5
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 1.1e-193 680.2 536 64.9
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 5.4e-193 677.9 438 76.9
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 1.2e-192 676.8 459 74.1
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 2.7e-192 675.6 539 65.1
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 2.3e-191 672.5 532 64.8
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 8.6e-191 670.6 537 64.8
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 1.5e-190 669.8 537 65.0
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 2.1e-189 666.0 538 64.1
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 2.8e-189 665.6 620 58.1
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 2.8e-189 665.6 535 65.2
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 8.0e-189 664.1 537 64.6
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 3.4e-187 658.7 537 62.9
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 1.4e-185 653.3 445 73.3
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 5.4e-185 651.4 450 72.4
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.2e-184 650.2 534 63.9
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 1.2e-184 650.2 506 66.6
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 1.6e-184 649.8 538 63.8
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 1.3e-183 646.7 534 62.9
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 9.5e-182 640.6 455 70.8
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 1.4e-180 636.7 536 63.4
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 4.0e-180 635.2 450 71.8
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 4.0e-180 635.2 536 63.4
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 5.2e-180 634.8 533 63.6
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 5.2e-180 634.8 449 71.3
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 2.0e-179 632.9 456 70.0
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 2.6e-179 632.5 448 71.0
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 4.4e-179 631.7 453 70.0
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 2.9e-178 629.0 536 62.9
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 1.1e-177 627.1 455 69.7
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 2.4e-177 625.9 455 69.5
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 2.4e-177 625.9 455 69.5
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 2.4e-177 625.9 455 69.9
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 3.2e-177 625.5 449 69.9
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 3.2e-177 625.5 535 60.9
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 3.2e-177 625.5 443 72.5
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 4.1e-177 625.2 448 71.4
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 5.4e-177 624.8 535 62.1
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 1.2e-176 623.6 460 69.6
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 1.2e-176 623.6 448 71.4
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 1.3e-175 620.2 456 69.5
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 1.7e-175 619.8 412 73.5
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 2.3e-175 619.4 512 62.9
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.0e-175 619.0 536 62.3
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 6.6e-175 617.8 448 69.9
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 4.3e-174 615.1 536 62.1
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 4.3e-174 615.1 400 76.2
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 1.2e-173 613.6 451 68.7
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.1e-172 610.5 541 61.6
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 4.0e-172 608.6 536 60.6
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 2.0e-171 606.3 534 60.5
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 3.8e-170 602.1 534 60.9
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 1.0e-167 594.0 460 65.0
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 2.3e-167 592.8 617 55.3
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 3.3e-166 589.0 455 66.6
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 5.6e-166 588.2 569 56.8
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 9.6e-166 587.4 448 66.5
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 4.0e-164 582.0 444 68.2
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 6.9e-164 581.3 448 65.6
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 1.4e-161 573.5 512 59.4
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 1.4e-161 573.5 512 59.4
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 8.1e-157 557.8 443 65.5
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 4.0e-156 555.4 445 64.7
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 4.2e-153 545.4 459 61.7
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 5.1e-151 538.5 488 58.2
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 4.3e-150 535.4 533 55.9
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.4e-147 525.8 597 52.1
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.4e-147 525.8 536 55.6
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 1.8e-140 503.4 559 51.0
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 5.8e-139 498.4 490 55.9
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 1.0e-138 497.7 340 72.6
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 3.0e-135 486.1 457 58.9
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 4.8e-133 478.8 344 70.6
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 8.8e-127 458.0 456 53.7
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 1.5e-123 447.2 443 56.2
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.0e-119 434.5 370 61.6
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 2.6e-118 429.9 442 52.9
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 9.4e-113 411.4 394 56.6
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 4.1e-108 396.0 438 51.8
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.1e-105 387.9 311 64.0
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.3e-101 374.4 234 77.8
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 3.2e-97 359.8 339 57.5
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 3.4e-94 349.7 262 66.8
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.2e-88 331.3 795 31.3
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 7.0e-84 315.5 880 28.2
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.3e-82 311.2 802 30.4
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 3.9e-82 309.7 757 31.4
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 2.5e-81 307.0 196 77.6
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.2e-77 293.9 298 53.4
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 2.2e-77 293.9 210 70.0
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 8.1e-72 275.4 170 78.2
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 1.1e-71 275.0 292 49.7
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 1.8e-71 274.2 309 49.8
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 1.2e-67 261.5 286 49.7
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.2e-64 251.5 286 50.3
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.6e-64 250.0 308 48.4
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 2.9e-61 240.4 243 53.9
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 2.3e-34 151.0 129 62.8
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 5.5e-28 129.8 106 63.2
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 4.6e-27 126.7 598 24.7
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 8.4e-21 105.9 102 53.9
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 7.2e-20 102.8 68 75.0
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 1.3e-16 92.0 69 63.8
Zm00001eb417300 Zea mays HOM05D006383 ORTHO05D007815 2.8e-16 90.9 105 50.5
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 1.8e-10 71.6 66 59.1
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 1.7e-08 65.1 306 25.5
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 3.7e-08 63.9 42 69.0
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 6.3e-08 63.2 47 70.2


User provided reference genes

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