Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.0e-121 440.3 248 100.0
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 2.2e-100 369.4 248 84.3
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 6.6e-97 357.8 248 79.0
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 5.2e-86 321.6 248 67.7
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 8.9e-86 320.9 249 67.9
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 4.4e-85 318.5 249 69.5
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 2.7e-82 309.3 249 68.3
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 2.7e-82 309.3 248 66.5
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 4.6e-82 308.5 232 70.3
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.8e-82 307.8 232 70.3
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.3e-81 307.0 232 70.3
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 2.3e-81 306.2 249 65.9
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 2.3e-81 306.2 232 69.4
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 5.0e-81 305.1 244 67.2
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.6e-81 304.7 232 69.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-80 303.9 232 69.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 5.6e-80 301.6 251 66.1
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 5.6e-80 301.6 234 69.2
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 6.2e-79 298.1 252 65.1
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 8.0e-79 297.7 242 65.3
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.1e-78 297.4 233 67.8
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 2.3e-78 296.2 248 63.7
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 3.1e-78 295.8 249 64.3
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 5.2e-78 295.0 232 68.5
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.5e-77 293.5 249 63.9
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.6e-77 292.7 251 63.3
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 3.4e-77 292.4 238 66.0
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 4.4e-77 292.0 229 66.8
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 5.8e-77 291.6 250 63.2
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.5e-77 291.2 247 63.6
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.3e-76 290.4 250 62.4
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 2.2e-76 289.7 231 67.5
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 2.9e-76 289.3 248 64.9
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 4.9e-76 288.5 248 64.1
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 4.9e-76 288.5 249 61.8
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 6.4e-76 288.1 251 63.3
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.1e-75 287.3 243 65.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 1.4e-75 287.0 248 63.3
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.4e-75 287.0 248 63.3
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.4e-75 287.0 233 65.2
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.9e-75 286.6 229 64.2
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 4.1e-75 285.4 243 64.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 1.2e-74 283.9 243 65.0
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.6e-74 283.5 251 62.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.7e-74 282.7 250 61.6
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 7.8e-74 281.2 256 62.5
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 7.8e-74 281.2 250 62.0
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.3e-73 280.4 251 61.0
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.7e-73 280.0 251 62.2
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.7e-73 280.0 248 62.1
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 3.9e-73 278.9 224 66.1
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 3.9e-73 278.9 230 64.8
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.5e-72 276.2 244 62.7
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 3.3e-72 275.8 230 65.2
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 4.3e-72 275.4 244 62.7
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.2e-71 273.9 246 62.2
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.8e-71 272.7 232 64.2
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 3.6e-71 272.3 222 64.4
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 4.7e-71 271.9 250 61.2
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 8.1e-71 271.2 242 62.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.1e-70 270.8 250 60.0
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.4e-70 270.4 254 57.5
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 4.0e-70 268.9 252 59.1
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 5.2e-70 268.5 243 62.1
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 8.9e-70 267.7 255 61.2
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 8.9e-70 267.7 255 60.0
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.2e-69 267.3 243 61.7
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.0e-69 266.5 257 57.2
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 3.4e-69 265.8 254 57.9
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 4.4e-69 265.4 247 61.5
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 4.4e-69 265.4 249 59.0
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 7.5e-69 264.6 231 64.5
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.7e-68 263.5 243 60.9
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.9e-68 262.7 247 59.5
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 3.7e-68 262.3 252 66.7
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 3.7e-68 262.3 243 60.1
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.7e-68 262.3 252 59.1
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 6.4e-68 261.5 247 57.9
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.3e-68 261.2 256 56.2
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 8.3e-68 261.2 234 62.4
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.4e-67 260.4 250 57.6
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.4e-67 260.4 247 59.1
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.4e-67 260.4 257 57.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 2.4e-67 259.6 259 56.0
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.1e-67 258.8 257 58.4
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 9.2e-67 257.7 226 64.2
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 6.0e-66 255.0 231 61.0
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 6.0e-66 255.0 231 61.0
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.9e-65 252.3 178 71.9
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.1e-64 250.8 256 58.2
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.5e-64 250.4 223 63.7
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.3e-64 249.2 257 55.3
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 5.6e-64 248.4 251 55.8
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 5.6e-64 248.4 251 55.8
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.6e-64 248.4 249 56.6
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 3.6e-63 245.7 257 54.1
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 3.6e-63 245.7 246 60.2
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 4.0e-62 242.3 249 53.8
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 7.6e-61 238.0 258 56.2
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 4.9e-60 235.3 236 59.7
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 9.2e-59 231.1 258 51.9
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 9.2e-59 231.1 230 57.0
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 2.1e-58 229.9 222 60.4
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 8.7e-57 224.6 229 55.5
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 4.7e-55 218.8 257 52.1
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 4.7e-55 218.8 256 52.7
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.8e-54 216.9 256 52.3
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.8e-54 216.9 256 52.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 4.0e-54 215.7 258 51.2
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 3.4e-53 212.6 257 51.0
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.9e-51 206.8 169 64.5
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 2.3e-49 199.9 186 61.3
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 2.3e-49 199.9 133 74.4
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 2.9e-44 183.0 183 57.4
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 5.8e-37 158.7 124 66.1
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 4.9e-36 155.6 133 62.4
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 5.1e-33 145.6 248 40.3
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 2.5e-24 116.7 175 39.4
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 5.7e-24 115.5 172 42.4
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 9.7e-24 114.8 129 53.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.3e-22 109.0 75 70.7
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 2.0e-21 107.1 139 47.5
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 2.7e-18 96.7 79 68.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 7.9e-18 95.1 136 44.9
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 5.7e-16 89.0 100 50.0
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.7e-15 87.4 95 50.5
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 2.4e-14 83.6 62 64.5
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.4e-11 74.3 120 40.0
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 4.4e-08 62.8 53 62.3
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 9.7e-08 61.6 82 42.7
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 4.8e-07 59.3 70 48.6


User provided reference genes

Program Settings