Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 3826.2 1961 100.0
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 3425.6 2081 87.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 3280.3 1950 87.5
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 2704.9 1982 74.8
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2224.5 1983 61.4
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2204.9 1978 60.6
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2201.0 2014 59.7
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2197.5 2023 59.9
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2192.2 1999 60.3
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2186.8 1997 60.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2180.2 2129 57.1
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2179.4 1990 59.7
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2177.1 1993 60.5
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2165.6 1975 59.4
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2147.9 2001 59.4
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2143.6 2004 58.4
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2137.5 1980 59.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2133.6 2011 58.5
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2131.3 1977 59.2
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2127.8 1977 59.3
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2125.5 1977 59.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2119.7 1987 58.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2110.5 1986 59.0
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2110.1 1984 58.5
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2106.3 1984 58.3
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2079.7 1991 57.4
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2071.2 1985 57.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2067.7 1955 57.8
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2045.8 1984 57.2
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1994.9 1965 56.1
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1978.0 1971 55.7
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1978.0 1980 55.7
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1977.6 1904 56.5
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1976.8 2029 55.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1976.4 1980 55.4
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1974.5 1973 55.7
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1966.0 2004 55.7
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1962.2 1977 55.3
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1959.5 1952 56.1
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1955.3 1926 57.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1954.5 1951 55.9
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1953.3 2014 54.7
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1949.5 1631 61.6
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1941.4 1989 55.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1935.2 1991 55.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1934.5 1863 57.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1933.7 1550 63.5
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1932.9 1545 63.4
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1931.4 1995 54.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1926.8 1964 55.1
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1913.3 1850 56.3
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1882.5 2012 52.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1879.8 1952 54.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1863.6 1988 53.1
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1856.6 2084 51.6
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1850.9 2015 52.5
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1829.7 2001 52.2
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1816.6 1878 53.7
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1816.2 1959 52.8
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1810.4 1903 53.5
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1808.5 1963 52.6
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1805.8 1860 54.0
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1803.1 1984 51.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1799.6 1973 52.8
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1794.6 1820 54.7
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1791.2 1863 53.7
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1789.2 1967 52.0
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1781.1 1475 61.6
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1780.8 2134 50.4
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1777.7 2002 51.3
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1776.9 2017 51.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1764.2 1969 51.8
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1740.7 2006 50.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1735.7 1994 51.6
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1731.5 1891 52.3
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1722.6 2082 49.4
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1721.8 1707 56.1
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1719.5 1958 50.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1697.6 1979 49.3
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1695.6 2004 50.3
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1683.3 1333 64.1
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1680.2 1884 49.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1649.0 1869 49.9
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1647.5 1869 49.8
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1645.2 1937 49.8
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1642.9 1994 49.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1642.1 1950 49.6
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1627.1 1874 49.4
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1610.5 1969 48.7
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1610.5 1845 51.5
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1610.5 1845 51.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1598.2 2009 46.7
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1597.4 1908 48.3
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1591.2 1755 50.2
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1545.8 1478 55.0
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1542.7 1953 47.7
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1541.9 1251 63.5
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1516.9 1871 46.9
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1500.7 1966 45.4
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1426.0 1220 62.5
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1075.1 1690 39.1
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.3e-311 1073.9 1644 39.5
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 8.9e-298 1028.1 1137 54.2
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.3e-292 1009.6 1958 35.6
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.3e-292 1009.2 1710 37.4
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 5.1e-285 985.7 1929 36.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.1e-284 984.6 957 55.6
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.3e-272 944.5 1175 48.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 4.9e-272 942.6 1866 36.2
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 5.8e-257 892.5 903 53.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.2e-255 886.3 1114 49.5
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 9.7e-252 875.2 1020 53.0
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.0e-240 838.6 1098 46.2
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.1e-238 829.3 1223 42.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.6e-217 761.5 1404 35.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.2e-211 741.1 1801 30.4
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.6e-183 646.7 579 57.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 3.9e-168 597.4 1182 35.5
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.9e-167 595.1 548 56.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 9.9e-156 556.2 472 62.1
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 6.7e-144 516.9 828 43.4
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.4e-140 504.6 668 42.7
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.4e-130 472.6 559 47.6
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-129 469.5 563 44.2
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.8e-125 455.7 548 46.5
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.7e-123 449.1 737 44.0
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 9.1e-93 347.1 277 63.2
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 3.0e-67 262.3 467 36.0
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.0e-63 249.6 384 41.1
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 5.8e-55 221.5 252 46.0
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.4e-53 216.1 621 31.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.2e-52 213.8 379 38.0
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 4.4e-47 195.3 694 29.5
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-45 190.3 350 38.0
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 9.6e-42 177.6 396 35.4
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 6.9e-40 171.4 1185 23.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.0e-35 157.5 135 53.3
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 7.4e-34 151.4 222 38.3
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-31 143.7 176 42.0
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.7e-30 140.2 160 45.6
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 7.1e-29 134.8 159 44.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.0e-28 131.7 111 64.9
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 6.7e-27 128.3 409 27.6
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 3.3e-26 125.9 121 58.7
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 4.3e-26 125.6 164 40.9
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 8.2e-25 121.3 85 71.8
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 2.4e-24 119.8 371 28.8
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 3.4e-23 115.9 80 65.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.5e-23 115.5 94 66.0
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.2e-20 107.5 151 44.4
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.2e-20 107.5 229 34.1
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.6e-20 107.1 148 42.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 7.9e-12 78.2 52 71.2
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.4e-11 77.4 93 53.8
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 3.9e-11 75.9 142 33.1
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 5.1e-11 75.5 173 33.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 8.8e-11 74.7 55 65.5
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 2.2e-09 70.1 94 51.1
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 2.2e-09 70.1 171 39.2
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.7e-09 69.3 59 57.6
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 6.3e-09 68.6 70 52.9
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.7e-06 60.5 59 52.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.7e-06 60.5 94 38.3


User provided reference genes

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