Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 4.4e-176 622.1 584 100.0
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 4.4e-160 568.9 584 92.3
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 7.1e-134 481.9 584 83.0
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.1e-122 443.7 538 82.3
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.9e-111 406.0 584 71.7
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 3.2e-110 403.3 583 69.1
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.6e-109 401.0 584 74.0
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.9e-107 394.0 583 72.7
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.5e-107 393.7 583 73.1
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.7e-107 392.5 581 74.0
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.4e-105 387.9 583 72.9
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 9.0e-105 385.2 583 73.1
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.6e-104 383.6 583 68.6
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.4e-104 383.3 583 71.0
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 8.4e-103 378.6 583 71.5
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 4.2e-102 376.3 585 69.7
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.2e-101 374.8 583 72.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.0e-100 371.7 583 72.0
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.3e-100 371.3 581 69.9
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 3.3e-99 366.7 583 71.5
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.5e-96 357.8 583 68.6
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.7e-95 354.4 581 72.1
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 5.5e-94 349.4 583 70.2
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 9.4e-94 348.6 583 69.5
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 2.7e-93 347.1 583 69.6
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 3.0e-92 343.6 581 73.7
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 3.9e-92 343.2 585 69.6
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.3e-90 338.2 584 71.6
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 2.2e-90 337.4 589 70.1
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 3.7e-90 336.7 589 68.8
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 6.3e-90 335.9 593 58.7
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 3.1e-89 333.6 583 67.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 9.1e-89 332.0 583 67.4
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.2e-88 331.6 586 56.3
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 3.4e-88 330.1 589 63.7
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 7.7e-88 328.9 583 64.0
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 7.7e-88 328.9 581 67.1
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.7e-87 327.8 505 71.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.2e-87 327.4 583 66.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 2.9e-87 327.0 583 67.2
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 5.0e-87 326.2 557 66.2
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.1e-86 325.1 512 66.4
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.9e-86 324.3 583 65.4
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.6e-85 321.2 583 68.3
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.1e-85 319.3 586 64.5
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.0e-84 318.5 417 68.3
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.8e-84 317.8 513 71.2
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.8e-84 317.8 583 70.2
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 5.1e-84 316.2 583 50.8
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 6.7e-84 315.8 583 65.2
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.5e-83 314.7 583 64.3
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 2.0e-83 314.3 600 64.5
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 3.3e-83 313.5 562 70.6
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 2.8e-82 310.5 583 67.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 6.3e-82 309.3 583 65.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.8e-81 307.8 585 67.9
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.4e-81 307.4 573 67.0
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 2.4e-81 307.4 583 68.4
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 7.0e-81 305.8 583 65.5
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.2e-80 305.1 589 62.3
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 2.6e-80 303.9 313 64.2
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.1e-78 298.5 583 65.4
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 2.5e-78 297.4 683 62.1
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 5.5e-78 296.2 596 58.7
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 9.4e-78 295.4 583 64.8
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 2.1e-77 294.3 558 66.7
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.7e-77 293.9 583 66.4
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.7e-77 293.1 574 53.7
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.8e-76 291.2 591 61.3
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.8e-76 291.2 584 67.0
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 2.3e-76 290.8 571 67.1
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 6.7e-76 289.3 582 67.0
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.6e-75 287.3 235 73.2
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.3e-74 285.0 585 66.2
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.3e-74 282.7 599 59.6
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.3e-74 282.7 585 66.0
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.4e-73 281.6 600 64.2
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 2.0e-72 277.7 585 65.1
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.6e-72 277.3 590 64.7
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 7.7e-72 275.8 583 65.5
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.0e-71 275.4 562 66.5
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.3e-71 275.0 643 57.9
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.7e-71 274.6 628 60.7
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.7e-71 274.6 512 65.6
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 3.2e-70 270.4 587 66.1
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 4.2e-70 270.0 584 64.0
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 2.1e-69 267.7 562 66.9
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 8.0e-69 265.8 590 61.0
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 3.0e-68 263.8 313 62.9
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 3.4e-67 260.4 446 73.3
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.2e-66 257.7 223 71.7
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 3.7e-66 256.9 561 67.2
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 8.5e-63 245.7 413 57.4
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 8.5e-63 245.7 592 61.8
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 2.5e-62 244.2 583 64.3
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 3.6e-61 240.4 518 68.5
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 8.0e-61 239.2 573 39.6
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 4.1e-57 226.9 586 56.8
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 9.1e-57 225.7 584 61.6
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.5e-51 208.4 593 53.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 3.2e-49 200.7 198 68.2
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.5e-46 191.8 544 59.4
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.6e-45 188.3 586 58.4
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 6.8e-44 183.0 145 64.1
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.3e-39 168.7 238 55.9
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.5e-35 155.2 121 69.4
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 6.2e-29 133.3 246 34.6
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 7.6e-27 126.3 113 58.4
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-25 119.4 143 62.2
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-25 119.4 143 62.2
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-25 119.4 143 62.2
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 8.1e-21 106.3 75 69.3
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 70.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 70.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.1e-20 104.4 75 69.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.2e-20 103.6 98 59.2
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 6.8e-20 103.2 75 69.3
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 2.4e-17 94.7 100 77.0
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.4e-17 94.7 73 63.0
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 3.0e-15 87.8 119 69.7
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.1e-13 81.6 53 73.6
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.4e-12 79.0 60 65.0
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.1e-12 77.8 225 43.6
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 6.9e-12 76.6 295 33.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 9.0e-12 76.3 75 46.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.1e-06 59.3 40 75.0
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 3.3e-06 57.8 50 58.0


User provided reference genes

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