Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.6e-91 339.3 169 100.0
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 5.8e-89 330.9 169 96.4
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 6.0e-86 320.9 169 92.9
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 5.9e-73 277.7 171 82.5
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 5.0e-64 248.1 173 72.3
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.4e-63 246.5 173 73.4
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.4e-63 246.5 173 73.4
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.2e-62 243.4 173 72.3
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 4.7e-62 241.5 173 73.4
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 8.0e-62 240.7 173 72.8
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 5.2e-61 238.0 173 71.1
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 5.2e-61 238.0 176 69.3
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.1e-60 236.9 174 69.0
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.5e-60 236.5 176 71.6
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 1.5e-60 236.5 176 68.2
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 2.0e-60 236.1 174 70.1
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 4.4e-60 235.0 156 76.3
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 4.4e-60 235.0 174 73.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 5.7e-60 234.6 174 71.3
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.3e-59 233.4 179 67.6
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.7e-59 233.0 173 67.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.2e-59 232.6 172 68.6
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.2e-59 232.6 172 68.6
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.7e-59 231.9 173 67.1
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.7e-59 231.9 181 69.6
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 3.7e-59 231.9 173 65.9
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 6.3e-59 231.1 180 67.8
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 6.3e-59 231.1 174 70.7
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.1e-58 230.3 180 64.4
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.1e-58 230.3 177 65.5
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.4e-58 229.9 176 68.2
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.8e-58 229.6 173 70.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.1e-58 228.4 157 75.2
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 4.1e-58 228.4 175 66.9
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 4.1e-58 228.4 172 67.4
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 5.3e-58 228.0 181 67.4
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 5.3e-58 228.0 178 69.1
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 9.1e-58 227.3 179 66.5
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 9.1e-58 227.3 179 66.5
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 1.2e-57 226.9 173 65.3
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 3.5e-57 225.3 176 66.5
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 3.5e-57 225.3 174 69.0
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 4.5e-57 224.9 176 68.8
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 4.5e-57 224.9 179 66.5
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 5.9e-57 224.6 179 65.4
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 7.7e-57 224.2 175 66.3
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 5.0e-56 221.5 176 68.2
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 6.5e-56 221.1 178 65.2
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.5e-55 219.9 135 75.6
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 1.9e-55 219.5 181 65.7
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.9e-55 219.5 176 68.2
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.5e-55 219.2 216 58.8
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 3.2e-55 218.8 179 67.0
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 4.2e-55 218.4 159 69.2
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 9.4e-55 217.2 185 63.8
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 9.4e-55 217.2 179 67.6
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-54 216.9 170 65.9
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.2e-54 216.9 170 65.9
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.6e-54 216.5 170 65.3
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.6e-54 216.5 171 65.5
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-54 216.5 171 65.5
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.6e-54 216.5 171 65.5
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.6e-54 216.5 183 63.4
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 2.1e-54 216.1 177 67.8
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 2.1e-54 216.1 183 65.6
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.7e-54 215.7 171 66.1
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.7e-54 215.7 178 64.0
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.6e-54 215.3 180 68.9
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 4.7e-54 214.9 176 64.8
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 6.1e-54 214.5 170 65.9
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 6.1e-54 214.5 170 65.9
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 6.1e-54 214.5 172 65.7
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 6.1e-54 214.5 178 63.5
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 8.0e-54 214.2 179 65.9
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.0e-53 213.8 168 65.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.8e-53 213.0 176 65.3
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.8e-53 213.0 176 65.3
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.8e-53 213.0 150 74.0
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 2.3e-53 212.6 176 64.2
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 6.7e-53 211.1 175 64.0
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 6.7e-53 211.1 169 68.6
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 6.7e-53 211.1 169 68.6
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 6.7e-53 211.1 179 66.5
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 6.7e-53 211.1 172 64.5
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 8.8e-53 210.7 182 65.4
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 8.8e-53 210.7 182 64.8
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.2e-52 210.3 168 63.7
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.2e-52 210.3 177 65.0
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 2.0e-52 209.5 170 65.9
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 4.4e-52 208.4 174 65.5
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 4.4e-52 208.4 169 66.3
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.3e-51 206.8 148 71.6
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 6.3e-51 204.5 184 60.3
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 2.4e-50 202.6 154 68.2
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 2.4e-50 202.6 172 60.5
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 3.1e-50 202.2 184 60.3
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.1e-50 201.8 164 63.4
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.6e-49 199.9 119 83.2
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.7e-49 199.1 169 65.1
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 3.5e-49 198.7 180 62.8
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 3.5e-49 198.7 183 60.7
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.0e-48 197.2 150 68.7
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.7e-48 196.4 127 74.8
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.2e-48 196.1 180 63.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 2.2e-48 196.1 141 72.3
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.8e-48 195.3 124 77.4
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.0e-48 194.9 180 57.8
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 2.5e-47 192.6 188 60.6
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 9.4e-47 190.7 286 42.0
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.2e-46 190.3 286 42.3
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.2e-46 190.3 162 62.3
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.6e-46 189.9 176 60.2
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 4.7e-46 188.3 142 70.4
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 6.1e-46 188.0 175 61.7
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.0e-45 187.2 148 65.5
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 5.2e-45 184.9 179 59.8
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 8.8e-45 184.1 148 64.9
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 3.4e-44 182.2 117 72.6
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 4.4e-44 181.8 179 59.2
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-43 179.9 149 64.4
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 7.0e-42 174.5 143 62.2
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 1.2e-38 163.7 121 66.9
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 6.3e-35 151.4 168 53.0
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.1e-34 150.6 214 48.1
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 2.4e-34 149.4 130 61.5
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 3.5e-33 145.6 121 60.3
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.9e-32 142.1 87 81.6
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.6e-32 141.4 87 79.3
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-31 140.6 87 78.2
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 3.3e-31 139.0 82 82.9
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.6e-30 136.7 82 80.5
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 2.0e-28 129.8 82 79.3
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 6.4e-27 124.8 87 74.7
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 6.4e-27 124.8 99 56.6
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 5.4e-26 121.7 108 51.9
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 8.6e-24 114.4 97 54.6
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 4.6e-17 92.0 54 83.3
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.2e-14 81.6 86 52.3
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.1e-13 79.3 90 48.9
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 4.0e-13 79.0 54 72.2
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 4.0e-13 79.0 84 51.2
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.0e-12 76.6 103 47.6
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 9.2e-10 67.8 71 54.9
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 6.0e-09 65.1 69 39.1
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 3.3e-07 59.3 43 65.1
Pp3c6_9300 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.6e-06 57.0 69 40.6
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 3.6e-06 55.8 88 42.0


User provided reference genes

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