Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.6e-138 495.4 244 100.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.4e-136 489.6 244 98.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.7e-132 474.6 244 95.1
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.7e-132 474.6 244 95.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.5e-106 388.3 244 78.3
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.1e-103 379.4 208 92.3
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-98 363.2 245 73.9
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 5.5e-88 328.2 217 73.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.2e-80 302.4 244 60.2
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.5e-77 292.7 243 59.7
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 7.4e-77 291.2 244 58.6
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.9e-75 284.6 244 55.7
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.2e-74 283.9 244 57.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-74 283.9 244 56.1
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.6e-74 282.7 245 60.4
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.5e-74 282.0 244 54.9
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.0e-73 280.8 244 56.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.9e-73 279.3 237 56.5
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 3.8e-73 278.9 234 58.5
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.0e-73 278.5 237 56.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.0e-73 278.5 236 58.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.4e-72 276.9 244 55.7
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-72 276.9 244 55.7
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.5e-72 276.2 244 56.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.5e-72 275.0 238 57.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.7e-71 271.9 238 57.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.3e-70 269.6 245 54.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 5.7e-69 265.0 237 59.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 2.8e-68 262.7 244 53.7
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.1e-67 260.8 238 58.0
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-67 259.2 236 54.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.0e-67 258.1 244 51.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.6e-66 256.1 244 50.8
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.3e-65 253.8 234 53.0
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.9e-65 252.7 234 53.0
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 8.5e-65 251.1 241 50.6
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 8.5e-65 251.1 234 52.6
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.1e-64 250.8 234 53.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.4e-64 250.4 236 55.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.9e-64 250.0 201 59.2
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.2e-64 248.1 241 50.6
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.2e-63 247.3 239 51.5
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.2e-63 247.3 234 49.1
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 4.7e-63 245.4 243 51.4
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 6.1e-63 245.0 246 50.8
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.4e-62 243.8 244 52.5
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.3e-62 243.0 243 51.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.9e-62 242.3 244 51.6
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-61 240.7 242 51.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.5e-61 240.4 237 48.5
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.5e-61 240.4 244 52.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.0e-61 240.0 250 49.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.0e-61 240.0 244 50.8
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.6e-61 239.6 215 56.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 5.7e-61 238.4 241 51.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-60 237.3 244 48.4
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-60 237.3 244 48.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.7e-60 236.9 244 48.4
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-60 236.9 244 48.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.8e-60 235.3 229 52.8
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-59 234.2 244 48.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-59 233.8 234 48.3
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.4e-59 233.0 234 49.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 7.0e-59 231.5 218 50.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.1e-59 231.1 234 48.3
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.0e-58 229.9 244 46.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.0e-58 229.9 246 45.1
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.6e-58 229.6 214 50.9
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.5e-58 228.8 243 48.6
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 5.9e-58 228.4 228 47.8
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.2e-57 226.5 243 47.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.8e-57 225.7 243 47.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 8.5e-57 224.6 236 50.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.1e-56 224.2 243 46.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.5e-56 223.8 244 45.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.5e-56 223.8 236 47.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.5e-56 223.8 238 48.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.5e-56 223.0 230 47.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.6e-55 220.3 234 47.0
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 3.6e-55 219.2 235 49.4
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.4e-54 217.2 237 48.5
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.8e-54 216.9 201 48.8
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.3e-54 216.5 234 45.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.0e-54 216.1 244 44.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.0e-54 216.1 241 47.7
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 4.0e-54 215.7 244 43.9
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 5.2e-54 215.3 244 44.7
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 5.2e-54 215.3 236 47.0
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 6.7e-54 214.9 244 44.7
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.8e-54 214.5 242 45.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.2e-53 214.2 236 47.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.5e-53 213.8 228 49.6
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.0e-53 213.4 236 48.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.0e-53 213.4 236 48.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.3e-53 212.6 234 45.7
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 3.3e-53 212.6 236 47.9
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.4e-53 212.2 236 47.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.4e-53 212.2 236 47.9
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 5.7e-53 211.8 238 45.4
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 5.7e-53 211.8 247 48.2
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 7.5e-53 211.5 198 51.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.3e-52 210.7 234 45.3
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.2e-52 209.9 245 45.7
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.7e-52 209.1 236 44.9
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-51 207.6 244 46.7
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.0e-51 204.9 245 41.6
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 9.1e-51 204.5 236 47.0
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.5e-50 202.6 246 44.3
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.9e-50 201.8 243 44.9
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 7.7e-50 201.4 235 44.7
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.7e-49 200.3 240 44.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 3.8e-49 199.1 245 41.2
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.5e-48 196.4 232 44.0
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.2e-48 195.7 203 49.3
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 5.5e-48 195.3 155 56.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.6e-47 193.7 237 44.7
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.1e-47 193.4 235 45.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.0e-47 191.4 244 44.3
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.0e-46 191.0 242 41.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.4e-46 190.7 236 44.9
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.3e-46 189.9 236 44.5
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.0e-46 189.5 152 57.9
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 4.0e-46 189.1 195 45.1
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 6.8e-46 188.3 232 44.0
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.2e-45 187.6 237 43.5
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.4e-45 185.7 237 45.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 5.7e-45 185.3 227 41.0
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-43 180.6 244 40.6
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-42 177.2 230 43.5
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.6e-42 177.2 152 53.3
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 7.7e-42 174.9 235 43.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.9e-41 172.9 215 41.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.8e-41 172.6 230 39.1
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.8e-41 172.6 215 41.9
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.6e-41 171.8 182 45.6
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-40 170.6 179 42.5
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.5e-40 169.9 145 54.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.5e-40 169.9 219 41.1
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 2.5e-40 169.9 215 37.7
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 5.5e-40 168.7 216 37.5
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 9.5e-40 167.9 151 50.3
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-39 167.5 165 48.5
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.8e-39 166.4 240 40.4
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.8e-39 166.4 240 40.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.0e-38 164.5 219 38.4
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.4e-38 164.1 218 37.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 3.4e-37 159.5 245 42.0
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.4e-37 159.1 218 34.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 9.8e-37 157.9 122 59.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.3e-36 157.5 214 39.3
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.3e-36 154.8 222 39.6
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 9.2e-35 151.4 174 46.6
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.6e-32 142.1 146 50.0
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 7.3e-32 141.7 119 58.0
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.2e-31 141.0 221 33.5
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 6.1e-31 138.7 227 32.6
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 3.1e-30 136.3 192 34.4
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 8.9e-30 134.8 140 44.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-26 124.4 212 35.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.6e-23 114.0 81 64.2
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.5e-21 107.5 115 48.7
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-20 103.6 87 52.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.4e-20 102.1 89 50.6
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-19 101.3 205 33.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.2e-19 99.8 93 47.3
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 5.4e-19 99.0 89 56.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 2.1e-18 97.1 143 39.2
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.0e-18 95.5 153 35.9
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.0e-17 93.2 126 42.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 7.3e-16 88.6 101 40.6
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.3e-16 88.6 221 33.9
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 78 48.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 100 41.0
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-13 80.5 106 35.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 9.9e-13 78.2 81 45.7
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.9e-12 75.9 170 27.6
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.2e-10 71.2 55 56.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 3.6e-07 59.7 104 38.5
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 8.1e-07 58.5 71 52.1


User provided reference genes

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