Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 8.6e-263 909.8 477 100.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.1e-254 882.9 477 97.3
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.1e-228 796.6 480 87.1
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 3.1e-196 688.7 392 90.1
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 9.4e-193 677.2 487 73.9
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 5.1e-191 671.4 488 73.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 8.8e-191 670.6 489 74.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.3e-188 661.4 568 70.2
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 3.5e-187 658.7 479 72.7
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.7e-186 656.4 488 71.7
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 3.8e-186 655.2 487 73.1
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 6.5e-186 654.4 488 73.6
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.1e-185 653.7 481 73.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.6e-184 649.8 479 73.3
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.8e-183 646.4 482 72.4
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 6.7e-183 644.4 482 71.6
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.1e-182 643.7 486 70.0
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.0e-182 642.9 481 70.1
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.6e-182 642.5 487 71.5
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 7.5e-182 641.0 486 69.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-181 640.2 491 69.0
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.2e-181 639.4 506 69.4
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.8e-181 638.3 479 72.2
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 4.8e-181 638.3 489 70.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 6.3e-181 637.9 478 71.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 6.3e-181 637.9 478 71.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.3e-181 637.9 479 72.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.1e-180 637.1 477 71.7
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.4e-180 636.7 477 71.9
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.4e-180 636.7 484 71.1
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.8e-180 636.3 486 71.0
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-180 636.0 479 69.9
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 4.1e-180 635.2 478 70.7
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 4.1e-180 635.2 480 72.1
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 5.3e-180 634.8 482 69.9
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.2e-179 633.6 498 68.9
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.6e-179 633.3 499 68.9
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.5e-179 632.1 480 69.6
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.5e-179 631.7 479 69.7
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 4.5e-179 631.7 480 70.8
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 5.9e-179 631.3 478 69.0
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.0e-178 630.6 481 69.9
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 3.8e-178 628.6 481 69.4
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.8e-178 628.6 480 71.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 6.5e-178 627.9 478 69.2
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 8.5e-178 627.5 487 69.2
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.9e-177 626.3 477 70.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.5e-177 625.9 484 68.2
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.5e-177 625.9 478 70.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.2e-177 625.5 486 69.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.6e-176 623.2 477 70.0
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 4.7e-176 621.7 490 68.4
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 6.1e-176 621.3 482 71.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 8.0e-176 620.9 477 69.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-175 620.2 474 69.0
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.8e-175 617.8 509 67.6
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.5e-174 616.7 478 68.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.5e-174 616.7 479 69.3
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.0e-174 616.3 477 68.3
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 5.7e-174 614.8 484 69.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 5.7e-174 614.8 532 63.9
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.8e-174 614.0 477 68.3
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 3.7e-173 612.1 481 66.3
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 4.8e-173 611.7 488 67.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.8e-173 611.7 477 70.9
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.8e-173 611.7 483 68.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.1e-172 610.5 485 67.8
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.4e-172 610.1 488 67.2
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.8e-172 609.8 479 68.5
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.8e-172 609.8 484 67.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.1e-172 608.6 504 66.9
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 7.0e-172 607.8 483 67.5
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-171 607.1 474 67.9
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-171 607.1 474 67.9
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.6e-171 606.7 478 68.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.0e-171 606.3 510 66.7
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.0e-171 606.3 476 69.7
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.5e-171 605.5 477 69.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.0e-170 604.0 534 64.2
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.7e-170 603.2 477 67.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.2e-170 602.8 475 69.3
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.8e-170 602.1 490 68.8
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-169 600.1 418 79.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.5e-169 600.1 353 85.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.9e-169 599.7 479 67.6
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.9e-169 599.7 455 70.8
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 7.2e-169 597.8 486 66.3
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.2e-168 597.0 478 68.4
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 1.6e-168 596.7 483 68.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.6e-168 596.7 533 62.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-168 596.3 460 68.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 2.1e-168 596.3 373 78.8
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 4.7e-168 595.1 473 68.9
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.0e-167 592.4 475 68.6
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.4e-166 589.0 484 65.5
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 4.4e-166 588.6 395 74.9
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 7.5e-166 587.8 478 66.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.3e-165 587.0 473 68.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.7e-165 586.6 371 78.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 9.2e-164 580.9 486 65.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-163 580.5 474 66.2
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.2e-163 580.5 479 68.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 4.5e-163 578.6 517 61.7
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.0e-162 577.4 436 70.9
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.3e-162 577.0 506 63.4
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.3e-162 576.2 460 68.7
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 3.8e-162 575.5 486 64.6
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.8e-160 569.3 475 66.3
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 6.1e-160 568.2 498 64.3
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 5.2e-159 565.1 479 65.3
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 8.9e-159 564.3 497 63.6
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.0e-158 563.1 333 83.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.7e-157 560.1 484 65.5
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.7e-157 558.9 482 63.9
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 4.9e-157 558.5 484 65.3
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.1e-156 557.4 467 64.9
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.9e-155 551.6 483 64.8
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.3e-154 549.7 499 61.7
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.2e-152 543.9 477 64.4
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.3e-151 539.7 342 78.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.6e-147 526.9 471 60.1
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.0e-147 526.6 477 63.1
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 4.6e-147 525.4 412 69.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.0e-147 525.0 510 60.4
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.3e-146 523.9 446 64.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 3.3e-145 519.2 274 90.5
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.6e-144 515.8 279 88.5
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.4e-143 513.8 479 61.6
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 8.3e-141 504.6 505 57.4
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 9.2e-140 501.1 465 59.1
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.3e-138 497.3 332 72.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.8e-135 485.0 476 57.8
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.4e-134 482.3 388 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.4e-132 477.2 330 70.3
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.5e-131 472.6 333 71.8
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-127 460.3 452 59.3
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.2e-124 449.5 353 67.1
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 6.6e-122 441.8 409 56.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.6e-118 429.9 445 56.9
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 7.9e-115 418.3 487 54.2
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.1e-105 387.9 388 56.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.8e-104 382.5 287 69.3
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.4e-100 370.9 337 55.8
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.9e-100 370.5 433 49.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.7e-82 308.9 411 51.3
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.4e-76 291.2 478 43.9
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 2.5e-76 290.4 260 56.9
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.8e-64 249.6 467 40.0
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.3e-53 214.2 382 37.2
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 8.3e-40 169.1 255 48.2
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.1e-36 158.7 120 67.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 9.2e-31 139.0 152 53.3
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.6e-29 132.9 81 79.0
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.4e-23 114.4 126 53.2
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 9.2e-23 112.5 112 54.5
MELO3C030809.2 Cucumis melo HOM05D004788 ORTHO05D034954 5.1e-21 106.7 87 73.6
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.6e-21 106.3 210 40.5
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 9.5e-20 102.4 205 40.5
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.4e-18 97.8 217 39.6
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.0e-09 68.2 290 25.2
MELO3C029670.2 Cucumis melo HOM05D004480 ORTHO05D171599 2.6e-09 67.8 71 71.8
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 3.4e-09 67.4 329 24.0
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 7.6e-09 66.2 291 26.8
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.2e-08 64.7 326 25.2
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.9e-08 64.3 322 24.2
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.8e-08 63.9 291 26.5
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 4.9e-08 63.5 291 26.5
CsaV3_4G021940 Cucumis sativus L. HOM05D299861 ORTHO05D000049 2.4e-07 61.2 34 91.2
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 4.2e-07 60.5 227 26.0
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 7.1e-07 59.7 199 22.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.6e-06 58.5 256 24.2
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-06 58.5 241 23.7
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 2.7e-06 57.8 199 23.1


User provided reference genes

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