Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G020880 Cucumis sativus L. HOM05D001011 ORTHO05D045018 1.1e-133 479.9 241 100.0
CsaV3_2G021140 Cucumis sativus L. HOM05D001011 ORTHO05D045018 1.1e-133 479.9 241 100.0
MELO3C019831.2 Cucumis melo HOM05D001011 ORTHO05D000851 1.3e-36 157.5 95 87.4
ClCG08G007770 Citrullus lanatus HOM05D001011 ORTHO05D000851 1.0e-30 137.9 139 58.3
Sed0027171 Sechium edule HOM05D001011 ORTHO05D000851 3.9e-30 136.0 95 77.9
Dinv36387 Davidia involucrata HOM05D001011 ORTHO05D000851 7.2e-16 88.6 95 49.5
COL.COLO4_36537 Corchorus olitorius HOM05D001011 ORTHO05D000851 9.4e-16 88.2 95 50.5
Prupe.2G208000 Prunus persica HOM05D001011 ORTHO05D000851 2.7e-15 86.7 92 55.4
CiPaw.01G267900 Carya illinoinensis HOM05D001011 ORTHO05D000851 3.6e-15 86.3 98 49.0
Potri.010G227800 Populus trichocarpa HOM05D001011 ORTHO05D000851 3.6e-15 86.3 95 50.5
Gohir.D10G210300 Gossypium hirsutum HOM05D001011 ORTHO05D000851 6.1e-15 85.5 95 49.5
Gorai.011G235700 Gossypium raimondii HOM05D001011 ORTHO05D000851 6.1e-15 85.5 95 49.5
Gohir.A10G202100 Gossypium hirsutum HOM05D001011 ORTHO05D000851 1.0e-14 84.7 95 49.5
Eucgr.G02874 Eucalyptus grandis HOM05D001011 ORTHO05D000851 1.4e-14 84.3 95 48.4
MD01G1102400 Malus domestica HOM05D001011 ORTHO05D000851 1.8e-14 84.0 94 50.0
Thecc.10G085800 Theobroma cacao HOM05D001011 ORTHO05D000851 1.8e-14 84.0 97 49.5
arahy.Tifrunner.gnm1.ann1.Z7QWNS Arachis hypogaea HOM05D001011 ORTHO05D000851 2.3e-14 83.6 107 47.7
CANSAT56G0914 Cannabis sativa HOM05D001011 ORTHO05D000851 2.3e-14 83.6 97 49.5
arahy.Tifrunner.gnm1.ann1.BQWU45 Arachis hypogaea HOM05D001011 ORTHO05D000851 3.0e-14 83.2 103 47.6
Potri.008G034600 Populus trichocarpa HOM05D001011 ORTHO05D000851 3.0e-14 83.2 92 51.1
TAR623G0634 Trochodendron aralioides HOM05D001011 ORTHO05D000851 3.0e-14 83.2 92 50.0
GSVIVG01016184001 Vitis vinifera HOM05D001011 ORTHO05D000851 3.0e-14 83.2 89 50.6
Ciclev10033705m.g Citrus clementina HOM05D001011 ORTHO05D000851 6.7e-14 82.0 95 45.3
Duzib106G2066 Durio zibethinus HOM05D001011 ORTHO05D000851 6.7e-14 82.0 95 48.4
RcHm_v2.0_Chr1g0362401 Rosa chinensis HOM05D001011 ORTHO05D000851 8.8e-14 81.6 92 51.1
Glyma.20G183600 Glycine max HOM05D001011 ORTHO05D000851 1.2e-13 81.3 107 44.9
Oeu010013.1 Olea europaea HOM05D001011 ORTHO05D000851 1.2e-13 81.3 95 47.4
Peaxi162Scf00145g00103 Petunia axillaris HOM05D001011 ORTHO05D000851 2.0e-13 80.5 104 46.2
TPR.G10284 Trifolium pratense HOM05D001011 ORTHO05D000851 2.6e-13 80.1 107 43.9
FvH4_7g18670 Fragaria vesca HOM05D001011 ORTHO05D000851 3.3e-13 79.7 92 50.0
Sabra10G0175700 Salix brachista HOM05D001011 ORTHO05D000851 3.3e-13 79.7 109 44.0
DCAR_019062 Daucus carota HOM05D001011 ORTHO05D000851 5.7e-13 79.0 92 48.9
FAN06G4472 Fragaria x ananassa HOM05D001011 ORTHO05D000851 5.7e-13 79.0 92 50.0
FAN06G4152 Fragaria x ananassa HOM05D001011 ORTHO05D000851 7.5e-13 78.6 92 50.0
FAN10G3513 Fragaria x ananassa HOM05D001011 ORTHO05D000851 7.5e-13 78.6 92 50.0
Glyma.10G207200 Glycine max HOM05D001011 ORTHO05D000851 7.5e-13 78.6 107 43.9
Lj5g0012592 Lotus japonicus HOM05D001011 ORTHO05D000851 7.5e-13 78.6 107 43.9
Nitab4.5_0008227g0010 Nicotiana tabacum HOM05D001011 ORTHO05D000851 9.7e-13 78.2 112 42.9
FAN01G3080 Fragaria x ananassa HOM05D001011 ORTHO05D000851 2.2e-12 77.0 92 48.9
Hma1.2p1_0838F.1_g226270 Hydrangea macrophylla HOM05D001011 ORTHO05D000851 2.2e-12 77.0 100 43.0
Nitab4.5_0001450g0170 Nicotiana tabacum HOM05D001011 ORTHO05D000851 2.2e-12 77.0 92 47.8
Haze_16746 Corylus avellana HOM05D001011 ORTHO05D000851 2.8e-12 76.6 101 46.5
Ca_10536_v3 Cicer arietinum L. HOM05D001011 ORTHO05D000851 3.7e-12 76.3 107 42.1
PGR142G1006 Punica granatum HOM05D001011 ORTHO05D000851 3.7e-12 76.3 94 48.9
CSS0001484 Camellia sinensis var. sinensis HOM05D001011 ORTHO05D000851 4.8e-12 75.9 95 45.3
Oeu046640.1 Olea europaea HOM05D001011 ORTHO05D000851 4.8e-12 75.9 92 46.7
FAN03G1901 Fragaria x ananassa HOM05D001011 ORTHO05D000851 6.3e-12 75.5 92 47.8
FAN28G1416 Fragaria x ananassa HOM05D001011 ORTHO05D000851 6.3e-12 75.5 92 47.8
CAN.G321.52 Capsicum annuum HOM05D001011 ORTHO05D000851 1.8e-11 73.9 124 40.3
Solyc11g008270.2 Solanum lycopersicum HOM05D001011 ORTHO05D000851 1.8e-11 73.9 92 47.8
Sopen11g004080 Solanum pennellii HOM05D001011 ORTHO05D000851 1.8e-11 73.9 92 47.8
SGA_v2.0_scaffold2G01348 Striga asiatica HOM05D001011 ORTHO05D000851 1.8e-11 73.9 94 46.8
Hma1.2p1_1903F.1_g307100 Hydrangea macrophylla HOM05D001011 ORTHO05D000851 2.4e-11 73.6 93 45.2
PGSC0003DMG400031067 Solanum tuberosum HOM05D001011 ORTHO05D000851 2.4e-11 73.6 92 46.7
QL07p043032 Quercus lobata HOM05D001011 ORTHO05D000851 4.1e-11 72.8 88 47.7
SEGI_21729 Sequoiadendron giganteum HOM05D001011 ORTHO05D000851 4.1e-11 72.8 144 31.2
Sc09g0006020 Simmondsia chinensis HOM05D001011 ORTHO05D000851 4.1e-11 72.8 93 45.2
Atru.chr12.861 Acer truncatum HOM05D001011 ORTHO05D000851 5.3e-11 72.4 95 41.1
Actinidia18610 Actinidia chinensis HOM05D001011 ORTHO05D000851 9.1e-11 71.6 53 52.8
Actinidia34801 Actinidia chinensis HOM05D001011 ORTHO05D000851 9.1e-11 71.6 117 37.6
Nn2g13819 Nelumbo nucifera HOM05D001011 ORTHO05D000851 9.1e-11 71.6 55 52.7
Psat6g180240 Pisum sativum HOM05D001011 ORTHO05D000851 1.2e-10 71.2 108 39.8
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.6e-10 70.9 95 41.1
Duzib128G0957 Durio zibethinus HOM05D001011 ORTHO05D000851 1.6e-10 70.9 111 39.6
Sabra08G0023000 Salix brachista HOM05D001011 ORTHO05D000851 2.0e-10 70.5 101 43.6
Cc02_g10840 Coffea canephora HOM05D001011 ORTHO05D000851 2.7e-10 70.1 99 42.4
Lalb_Chr02g0152041 Lupinus albus HOM05D001011 ORTHO05D000851 3.5e-10 69.7 86 45.3
Actinidia38873 Actinidia chinensis HOM05D001011 ORTHO05D000851 4.5e-10 69.3 95 40.0
MSTRG.391 Avicennia marina HOM05D001011 ORTHO05D000851 4.5e-10 69.3 95 42.1
Manes.09G064700 Manihot esculenta HOM05D001011 ORTHO05D000851 5.9e-10 68.9 91 46.2
HanXRQChr14g0455741 Helianthus annuus HOM05D001011 ORTHO05D000851 1.0e-09 68.2 93 44.1
Atru.chr8.1782 Acer truncatum HOM05D001011 ORTHO05D000851 1.3e-09 67.8 87 41.4
Cfa017632 Carpinus fangiana HOM05D001011 ORTHO05D000851 2.2e-09 67.0 88 45.5
Medtr1g094145 Medicago truncatula HOM05D001011 ORTHO05D000851 2.2e-09 67.0 107 39.3
MD04G1091600 Malus domestica HOM05D001011 ORTHO05D000851 3.8e-09 66.2 87 39.1
Carub.0005s2149 Capsella rubella HOM05D001011 ORTHO05D000851 8.5e-09 65.1 88 44.3
RcHm_v2.0_Chr3g0470451 Rosa chinensis HOM05D001011 ORTHO05D000851 1.1e-08 64.7 88 46.6
Thhalv10010843m.g Eutrema salsugineum HOM05D001011 ORTHO05D000851 1.5e-08 64.3 96 42.7
HanXRQChr08g0218411 Helianthus annuus HOM05D001011 ORTHO05D000851 1.5e-08 64.3 98 41.8
Pp3c9_10820 Physcomitrium patens HOM05D001011 ORTHO05D000851 1.5e-08 64.3 151 33.1
Sp5g07545 Schrenkiella parvula HOM05D001011 ORTHO05D000851 1.5e-08 64.3 98 40.8
AL5G35990 Arabidopsis lyrata HOM05D001011 ORTHO05D000851 1.9e-08 63.9 87 43.7
AT3G54880 Arabidopsis thaliana HOM05D001011 ORTHO05D000851 1.9e-08 63.9 87 43.7
Phvul.007G099500 Phaseolus vulgaris HOM05D001011 ORTHO05D000851 1.9e-08 63.9 90 40.0
BcaB01g00150 Brassica carinata HOM05D001011 ORTHO05D000851 2.5e-08 63.5 98 39.8
COL.COLO4_26942 Corchorus olitorius HOM05D001011 ORTHO05D000851 3.2e-08 63.2 87 36.8
FvH4_6g16540 Fragaria vesca HOM05D001011 ORTHO05D000851 3.2e-08 63.2 88 45.5
FAN02G3602 Fragaria x ananassa HOM05D001011 ORTHO05D000851 3.2e-08 63.2 88 45.5
FAN14G2935 Fragaria x ananassa HOM05D001011 ORTHO05D000851 3.2e-08 63.2 88 45.5
THA.LOC104826338 Tarenaya hassleriana HOM05D001011 ORTHO05D000851 3.2e-08 63.2 91 42.9
Dinv35796 Davidia involucrata HOM05D001011 ORTHO05D000851 4.2e-08 62.8 95 40.0
MSTRG.27491 Avicennia marina HOM05D001011 ORTHO05D000851 5.5e-08 62.4 94 37.2
BraA09t40239Z Brassica rapa HOM05D001011 ORTHO05D000851 5.5e-08 62.4 98 38.8
Migut.F01704 Erythranthe guttata HOM05D001011 ORTHO05D000851 5.5e-08 62.4 92 40.2
HanXRQChr07g0194711 Helianthus annuus HOM05D001011 ORTHO05D000851 5.5e-08 62.4 104 36.5
Lsat_1_v5_gn_8_20901 Lactuca sativa HOM05D001011 ORTHO05D000851 5.5e-08 62.4 51 58.8
MD12G1109500 Malus domestica HOM05D001011 ORTHO05D000851 5.5e-08 62.4 87 41.4
Manes.07G133128 Manihot esculenta HOM05D001011 ORTHO05D000851 5.5e-08 62.4 53 47.2
BcaC07g39770 Brassica carinata HOM05D001011 ORTHO05D000851 7.2e-08 62.0 98 38.8
A09p47820 Brassica napus HOM05D001011 ORTHO05D000851 7.2e-08 62.0 98 38.8
C08p30070 Brassica napus HOM05D001011 ORTHO05D000851 7.2e-08 62.0 98 38.8
BolC8t50616H Brassica oleracea HOM05D001011 ORTHO05D000851 7.2e-08 62.0 98 38.8
Prupe.7G128200 Prunus persica HOM05D001011 ORTHO05D000851 1.2e-07 61.2 87 39.1
TWI53G1876 Tripterygium wilfordii HOM05D001011 ORTHO05D000851 1.6e-07 60.8 87 36.8
CARHR164860 Cardamine hirsuta HOM05D001011 ORTHO05D000851 2.1e-07 60.5 96 38.5
FAN05G5155 Fragaria x ananassa HOM05D001011 ORTHO05D000851 2.1e-07 60.5 87 41.4
PSO339G1843 Papaver somniferum HOM05D001011 ORTHO05D000851 2.1e-07 60.5 85 43.5
Aa31sc43G90 Aethionema arabicum HOM05D001011 ORTHO05D000851 2.7e-07 60.1 90 40.0
Duzib106G1230 Durio zibethinus HOM05D001011 ORTHO05D000851 2.7e-07 60.1 87 36.8
Gohir.D09G141600 Gossypium hirsutum HOM05D001011 ORTHO05D000851 2.7e-07 60.1 87 35.6
Thecc.05G069100 Theobroma cacao HOM05D001011 ORTHO05D000851 3.6e-07 59.7 90 41.1
unitig_37.g12316 Utricularia gibba HOM05D001011 ORTHO05D000851 3.6e-07 59.7 50 48.0
vmacro07119 Vaccinium macrocarpon HOM05D001011 ORTHO05D000851 3.6e-07 59.7 98 39.8
unitig_46.g18607 Utricularia gibba HOM05D001011 ORTHO05D000851 4.7e-07 59.3 88 37.5
CiPaw.09G171300 Carya illinoinensis HOM05D001011 ORTHO05D000851 6.1e-07 58.9 82 43.9
Gorai.006G162500 Gossypium raimondii HOM05D001011 ORTHO05D000851 6.1e-07 58.9 87 35.6
MSTRG.8130 Avicennia marina HOM05D001011 ORTHO05D000851 8.0e-07 58.5 93 39.8
HanXRQChr06g0183161 Helianthus annuus HOM05D001011 ORTHO05D000851 1.4e-06 57.8 61 45.9
Lsat_1_v5_gn_2_108540 Lactuca sativa HOM05D001011 ORTHO05D000851 1.4e-06 57.8 104 33.7
ECA233G4551 Erigeron canadensis HOM05D001011 ORTHO05D000851 1.8e-06 57.4 87 41.4
AL6G12790 Arabidopsis lyrata HOM05D001011 ORTHO05D000851 2.3e-06 57.0 68 42.6
Phvul.007G148400 Phaseolus vulgaris HOM05D001011 ORTHO05D000851 2.3e-06 57.0 88 40.9
THA.LOC104816354 Tarenaya hassleriana HOM05D001011 ORTHO05D000851 2.3e-06 57.0 105 37.1
ClCG10G020040 Citrullus lanatus HOM05D001011 ORTHO05D000851 3.0e-06 56.6 93 39.8
FvH4_5g11090 Fragaria vesca HOM05D001011 ORTHO05D035356 3.0e-06 56.6 85 42.4
Rhsim03G0115500 Rhododendron simsii HOM05D001011 ORTHO05D000851 3.0e-06 56.6 116 31.9
CSS0032485 Camellia sinensis var. sinensis HOM05D001011 ORTHO05D000851 4.0e-06 56.2 136 27.9
FAN18G1348 Fragaria x ananassa HOM05D001011 ORTHO05D000851 4.0e-06 56.2 85 42.4
SGA_v2.0_scaffold64G21921 Striga asiatica HOM05D001011 ORTHO05D000851 6.8e-06 55.5 50 42.0
AT5G03440 Arabidopsis thaliana HOM05D001011 ORTHO05D000851 8.8e-06 55.1 78 38.5
FvH4_5g11160 Fragaria vesca HOM05D008495 ORTHO05D035356 8.8e-06 55.1 84 41.7
PSO801G0696 Papaver somniferum HOM05D001011 ORTHO05D000851 8.8e-06 55.1 92 37.0


User provided reference genes

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