Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.8e-255 884.0 450 100.0
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 7.9e-250 866.7 450 98.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.0e-245 852.0 462 94.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.7e-210 734.6 439 86.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 2.2e-191 672.5 436 76.8
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.4e-184 648.7 436 74.8
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 4.4e-184 648.3 432 75.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.1e-182 643.7 430 74.0
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.2e-182 642.1 433 75.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 9.2e-182 640.6 430 73.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 3.5e-181 638.6 433 74.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.7e-180 636.3 433 73.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.1e-179 633.6 449 71.7
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.1e-179 633.6 439 73.8
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 4.3e-179 631.7 433 73.7
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.6e-178 628.6 435 71.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 3.6e-178 628.6 433 73.2
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.6e-178 628.6 437 73.0
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 8.0e-178 627.5 433 73.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.1e-177 627.1 439 72.7
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.1e-177 625.5 439 72.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.8e-177 624.4 433 73.4
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 8.9e-177 624.0 437 71.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.4e-176 621.7 433 71.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 7.5e-176 620.9 431 72.2
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 7.5e-176 620.9 408 76.2
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-175 620.2 437 72.3
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.9e-175 619.0 438 72.6
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.4e-175 617.8 439 71.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.1e-174 617.1 430 71.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.1e-174 617.1 433 72.1
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.9e-174 616.3 435 71.5
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.4e-174 615.9 460 68.5
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.2e-174 615.5 433 71.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 5.4e-174 614.8 433 70.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.3e-172 610.1 438 72.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 5.0e-172 608.2 433 71.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 5.0e-172 608.2 427 70.3
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 4.3e-171 605.1 432 69.2
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 5.6e-171 604.7 440 70.2
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.1e-170 602.8 433 69.1
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.6e-170 602.1 430 70.0
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.3e-169 599.4 461 67.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.2e-168 597.0 437 70.3
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.2e-168 597.0 437 70.3
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 9.9e-168 594.0 437 69.8
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 3.7e-167 592.0 432 66.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 4.9e-167 591.7 429 69.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.1e-166 590.5 432 67.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.4e-166 589.3 404 74.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.4e-166 589.3 404 74.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.4e-166 589.3 432 67.4
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.6e-165 586.6 434 69.8
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 7.8e-165 584.3 431 67.5
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 7.8e-165 584.3 452 66.6
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 3.9e-164 582.0 400 73.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 5.1e-164 581.6 453 66.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 3.3e-163 578.9 428 68.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.8e-161 573.2 448 65.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.0e-161 572.0 430 67.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.5e-160 570.1 390 74.1
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.0e-160 569.7 390 74.1
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.9e-158 563.1 434 67.1
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 9.2e-158 560.8 447 64.4
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.1e-155 553.9 439 65.6
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.4e-153 547.0 431 63.6
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 5.3e-153 545.0 431 63.1
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.6e-152 542.7 403 69.0
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.3e-151 540.4 432 63.2
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.4e-150 536.2 455 59.3
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.5e-149 532.3 445 62.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.0e-148 530.8 439 62.4
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-148 529.3 436 61.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 3.0e-148 529.3 436 60.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 8.7e-148 527.7 450 59.6
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-147 527.3 435 62.8
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.5e-147 526.9 456 59.0
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.5e-147 526.9 452 59.1
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.9e-147 526.6 457 58.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 3.6e-146 522.3 454 63.2
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 6.2e-146 521.5 440 59.5
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.1e-145 519.2 382 67.5
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 3.1e-145 519.2 434 65.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 2.6e-144 516.2 443 60.7
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 5.8e-144 515.0 416 65.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.7e-143 513.5 438 58.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.9e-143 512.7 430 62.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.8e-143 512.3 457 57.3
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 8.4e-143 511.1 457 57.3
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 8.4e-143 511.1 430 62.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.4e-143 511.1 382 68.3
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.1e-142 510.8 437 60.9
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.4e-142 509.6 438 60.5
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.9e-141 504.6 391 66.0
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 3.0e-140 502.7 391 65.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 5.6e-139 498.4 383 64.8
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 9.6e-139 497.7 379 66.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.1e-137 494.2 441 59.0
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.4e-137 493.8 319 78.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.5e-136 490.3 434 61.3
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.6e-136 489.6 433 58.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.2e-135 486.5 349 69.6
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.8e-135 485.7 442 60.2
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.4e-135 484.6 417 59.0
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.5e-134 483.0 393 62.8
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.7e-132 474.6 464 56.2
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.5e-131 473.0 372 67.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-130 470.3 307 74.6
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.8e-130 468.8 432 56.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.0e-129 464.5 432 55.8
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-127 460.3 426 54.9
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 8.4e-127 458.0 443 56.4
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.8e-124 450.3 300 75.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 2.5e-123 446.4 433 56.4
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.4e-116 424.1 385 57.4
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.3e-116 423.3 352 60.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.0e-116 422.9 442 54.1
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-114 417.5 335 62.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 8.2e-114 414.8 435 53.3
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 8.0e-101 371.7 322 60.2
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 8.5e-95 351.7 280 65.7
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.1e-94 351.3 440 49.5
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.9e-94 350.5 278 62.2
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.4e-92 344.4 278 62.6
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.8e-92 344.0 278 61.5
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.6e-91 340.1 284 59.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 3.5e-88 329.7 350 50.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.7e-85 320.1 278 58.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 5.2e-84 315.8 288 54.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 8.8e-84 315.1 230 67.0
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.8e-77 293.5 329 46.5
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-75 288.1 157 94.9
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.4e-73 280.4 177 81.9
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 7.0e-73 278.9 157 90.4
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.2e-73 278.5 156 90.4
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.3e-71 273.9 370 43.0
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.5e-70 271.2 155 89.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 8.0e-69 265.4 163 74.2
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.4e-67 260.0 192 63.5
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 4.4e-67 259.6 156 84.0
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.8e-67 259.2 145 89.7
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 5.4e-65 252.7 513 37.4
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.4e-59 233.4 141 82.3
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.4e-59 233.0 288 46.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.9e-58 230.3 133 89.5
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.2e-57 225.3 184 65.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 5.6e-54 216.1 182 62.1
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.0e-52 209.9 122 84.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-48 198.4 132 81.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-48 198.0 231 45.9
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 3.3e-46 190.3 482 32.4
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 7.3e-46 189.1 154 60.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 8.4e-42 175.6 99 91.9
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.9e-41 174.5 106 84.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.9e-41 174.5 178 57.3
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.6e-38 162.9 303 37.6
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-36 158.3 140 58.6
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 6.4e-34 149.4 121 63.6
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 9.6e-30 135.6 146 52.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.5e-24 117.1 215 36.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 3.0e-23 114.0 68 86.8
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.1e-21 105.9 103 50.5
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.0e-20 103.6 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.8e-18 97.1 56 91.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.6e-16 91.7 283 29.3
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-12 78.6 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 1.1e-09 68.9 68 47.1
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 2.7e-08 64.3 50 62.0
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.3e-06 57.0 65 46.2


User provided reference genes

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