Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.8e-290 1000.7 484 100.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.8e-274 947.6 484 95.0
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 8.2e-237 823.5 485 83.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 9.2e-196 687.2 369 90.5
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.9e-193 679.5 479 70.1
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.8e-191 672.9 479 69.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 7.5e-190 667.5 479 69.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.0e-186 655.6 491 67.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 5.1e-186 654.8 371 86.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.5e-185 652.5 484 68.6
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.3e-185 651.0 481 67.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.2e-183 644.8 475 68.4
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 8.9e-183 644.0 484 66.9
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.5e-182 643.3 475 68.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.0e-182 642.9 454 71.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 9.9e-182 640.6 486 66.9
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.7e-181 639.8 490 65.7
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.9e-180 636.3 477 66.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 7.8e-179 630.9 459 68.8
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-178 629.8 430 72.8
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 4.3e-177 625.2 477 65.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.3e-177 625.2 481 64.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 7.3e-177 624.4 483 65.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.3e-177 624.4 446 68.2
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 4.7e-176 621.7 486 65.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.7e-176 621.7 479 64.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 6.2e-176 621.3 480 65.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.1e-175 620.5 461 67.5
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.0e-175 618.6 461 67.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 9.0e-175 617.5 477 63.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 9.0e-175 617.5 477 63.5
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.6e-174 615.9 481 63.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.6e-174 615.9 461 66.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.6e-174 615.9 479 64.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.7e-173 613.2 478 64.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.7e-173 613.2 456 68.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.2e-173 612.8 458 66.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.9e-173 612.5 475 63.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.9e-173 611.7 399 74.4
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.2e-172 608.6 445 67.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 5.4e-172 608.2 477 63.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.0e-170 602.4 493 63.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.9e-170 602.1 477 63.3
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.9e-169 599.7 461 64.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 7.3e-169 597.8 440 66.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 6.2e-168 594.7 480 62.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.8e-167 593.2 450 66.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.5e-166 588.6 488 61.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.5e-166 588.6 473 63.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 9.9e-166 587.4 526 58.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.2e-165 586.3 445 66.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.2e-164 582.4 398 70.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 7.1e-164 581.3 425 66.4
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.6e-163 580.1 487 61.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.6e-163 578.6 463 63.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 3.9e-162 575.5 481 60.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.1e-162 575.1 458 62.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 6.7e-162 574.7 404 69.3
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 6.7e-162 574.7 461 64.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.4e-161 571.2 486 59.7
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.1e-160 569.7 447 63.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.4e-159 567.0 456 63.8
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.8e-159 566.6 395 69.9
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.0e-159 565.5 476 58.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.0e-158 563.1 402 69.4
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.6e-158 562.8 488 60.7
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 4.5e-158 562.0 731 45.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 9.9e-158 560.8 467 60.0
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.9e-157 559.3 461 62.5
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 4.9e-157 558.5 398 69.6
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-156 557.4 476 58.4
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.5e-153 547.0 476 57.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.5e-153 547.0 432 64.6
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.5e-153 547.0 449 63.0
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 7.4e-153 544.7 475 61.3
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.6e-153 544.3 488 59.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.4e-151 540.4 422 65.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.3e-151 538.5 459 60.1
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 9.0e-151 537.7 469 61.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-150 537.3 478 55.4
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.2e-150 537.3 503 57.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-150 537.0 422 65.2
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.5e-150 537.0 480 55.6
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.4e-150 535.8 402 63.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.5e-150 535.4 422 64.7
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.2e-149 533.1 529 54.1
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.1e-148 530.8 435 63.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-148 530.8 457 59.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-148 530.8 457 59.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.1e-148 530.8 457 59.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-148 530.8 391 67.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-148 530.4 422 64.5
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-148 530.4 397 65.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.4e-148 530.4 418 66.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.9e-148 530.0 402 62.9
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.5e-148 529.6 427 60.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.2e-148 529.3 402 65.7
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 4.2e-148 528.9 439 63.3
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.1e-148 528.1 475 57.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.3e-148 527.7 435 59.8
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.6e-147 526.9 421 64.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.7e-147 526.2 492 56.1
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.6e-147 525.4 449 58.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 6.0e-147 525.0 478 54.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.0e-147 525.0 406 65.0
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.1e-146 521.9 489 56.2
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 5.1e-146 521.9 436 57.8
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-145 520.8 457 58.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-145 520.8 432 59.3
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-145 520.4 457 58.9
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.5e-145 520.4 406 63.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.9e-145 520.0 406 64.3
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.7e-145 518.5 402 60.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 6.3e-144 515.0 404 62.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-143 513.8 427 58.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-143 513.5 427 58.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.8e-143 513.5 427 58.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.8e-143 513.5 496 55.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.1e-143 512.7 493 55.6
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.1e-143 512.3 453 58.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.9e-143 511.5 493 55.4
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.6e-142 509.6 558 52.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.4e-142 509.2 406 61.3
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.5e-142 508.8 402 61.4
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.3e-141 507.3 460 58.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-141 506.9 457 56.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.9e-141 506.1 491 53.8
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.8e-141 505.8 453 58.7
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 6.5e-141 505.0 484 56.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 8.5e-141 504.6 428 57.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.9e-140 503.4 428 58.6
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-138 496.5 429 57.8
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.1e-138 495.4 396 62.6
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.3e-137 492.7 317 75.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.7e-137 491.9 400 62.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.7e-134 481.5 488 53.5
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.1e-132 477.6 346 66.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 5.5e-132 475.3 490 53.5
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.0e-130 469.5 600 46.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.4e-124 450.7 400 55.0
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.3e-122 443.4 405 56.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 9.7e-121 438.0 373 60.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.1e-119 433.0 400 52.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.5e-116 424.1 312 65.1
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.5e-116 422.2 404 51.5
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 3.1e-111 406.4 373 55.0
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.9e-85 319.7 340 52.4
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 3.6e-83 313.2 245 64.1
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-82 310.1 218 67.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.5e-78 296.6 261 59.4
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-74 283.9 222 60.8
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.4e-73 280.0 223 65.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 9.9e-73 278.5 253 57.3
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 9.5e-68 261.9 233 57.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-64 250.0 305 44.9
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.4e-56 222.2 413 38.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.9e-52 211.1 266 44.0
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 4.8e-51 206.5 472 32.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.0e-45 187.2 104 89.4
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.6e-38 164.9 262 40.1
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.9e-37 160.2 152 52.0
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.4e-34 151.0 177 46.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.6e-30 138.3 286 31.1
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-25 121.3 140 48.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.6e-25 120.9 121 55.4
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.2e-24 117.9 117 51.3
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.9e-23 114.8 660 21.4
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.9e-18 96.3 102 51.0
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.5e-16 89.4 143 42.7
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.1e-14 84.7 392 24.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.1e-10 70.5 69 49.3
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.3e-10 70.1 47 68.1
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.9e-07 61.6 36 77.8
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 4.7e-06 57.0 44 56.8


User provided reference genes

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