Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 3662.8 1884 100.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 3379.0 2013 88.3
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 3344.7 1885 90.6
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 3235.3 1884 89.4
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2748.0 1888 73.6
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2712.6 1888 72.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2701.4 1888 72.6
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2699.1 1886 71.7
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2694.8 1888 72.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2692.9 1883 72.2
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2690.2 1887 72.2
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2659.0 1891 70.9
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2647.1 1889 70.9
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2630.1 1886 70.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2628.6 1902 70.4
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2625.9 1886 70.3
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2625.1 1888 70.1
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2620.5 1886 70.1
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2617.8 1916 69.2
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2615.1 1892 69.7
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2605.1 1886 69.8
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2598.2 1890 69.3
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2598.2 1901 69.8
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2595.1 1921 69.8
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2591.2 1889 69.6
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2587.8 1890 69.8
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2579.7 1904 69.2
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2574.3 1891 69.0
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2573.5 1885 69.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2573.1 1887 69.1
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2567.3 1883 68.6
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2556.9 1892 68.6
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2555.0 1946 67.0
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2554.6 1885 68.9
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2548.5 1892 68.1
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2545.4 1892 68.6
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2535.4 1889 69.2
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2516.5 2021 65.4
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2509.9 1891 67.0
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2503.8 1888 66.9
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2499.2 1890 66.9
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2489.9 1888 66.4
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2489.1 1713 74.0
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2487.2 1886 66.8
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2483.0 1894 66.4
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2473.7 1888 66.3
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2471.8 1888 66.9
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2468.3 1886 66.4
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2456.4 1892 66.0
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2437.1 1895 65.4
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2431.0 1890 65.4
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2420.6 1888 65.7
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2418.7 1954 63.6
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2413.6 1884 65.0
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2406.3 1885 64.9
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2404.0 1901 64.5
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2403.6 1890 64.8
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2397.1 1885 65.1
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2395.5 1881 64.9
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2390.9 1885 64.5
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2375.5 1951 63.0
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2374.4 1889 63.5
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2361.3 1907 64.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2338.5 1925 63.0
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2334.3 1632 71.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2330.1 2317 55.3
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2329.3 1889 64.0
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2327.4 1889 63.4
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2326.2 1891 63.5
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2322.7 1890 63.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2319.7 1885 63.0
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2282.3 1896 63.1
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2280.8 1586 72.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2268.0 1925 62.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2253.8 1889 61.5
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2226.1 1889 61.8
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2156.7 1508 73.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2135.5 1473 73.3
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1889.4 1456 66.6
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1886.7 1582 61.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1794.6 1424 64.3
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1726.8 1187 73.2
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1724.5 1911 47.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1682.2 1902 47.5
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1632.8 1424 59.7
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1626.3 1934 46.3
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1614.4 1447 58.0
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1539.6 1929 44.0
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1521.9 1884 48.0
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1379.0 1188 59.9
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1367.8 1242 57.6
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1300.0 1950 39.4
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1249.6 960 67.0
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1227.2 840 71.9
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1192.6 1129 57.6
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1084.7 1241 49.2
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1083.6 1632 42.9
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 7.5e-294 1015.0 782 65.5
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 9.8e-286 988.0 1632 40.2
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 7.6e-262 908.7 783 57.6
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 4.8e-256 889.4 698 67.8
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.4e-255 887.1 771 58.8
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.1e-239 835.1 695 62.0
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.3e-226 791.6 1056 46.1
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 9.4e-204 715.7 607 60.8
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.6e-203 713.8 699 53.2
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 9.7e-201 705.7 1011 39.7
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.7e-200 704.9 1043 40.6
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 4.8e-200 703.4 518 70.5
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 4.1e-183 647.1 514 66.3
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.9e-167 595.1 509 63.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.0e-129 468.8 398 58.3
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.8e-115 421.0 424 54.5
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 3.1e-114 418.3 416 57.2
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 2.6e-105 388.7 299 65.2
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.7e-91 342.8 210 81.0
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 9.1e-90 337.0 228 73.7
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.0e-88 331.3 342 54.1
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 8.5e-88 330.5 321 55.8
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.5e-87 329.7 329 54.7
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.2e-87 328.6 366 48.9
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 4.4e-84 318.2 328 54.6
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.3e-83 316.6 299 57.9
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.2e-83 315.8 277 59.6
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.8e-75 288.1 264 59.8
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 4.8e-75 288.1 318 51.3
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 1.2e-62 246.9 176 69.9
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-58 233.8 181 65.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.8e-58 233.0 230 54.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.8e-58 233.0 230 54.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.6e-54 219.9 202 59.4
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 8.0e-54 217.6 413 40.0
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.3e-53 216.1 1733 22.6
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 4.1e-50 205.3 211 54.5
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 5.4e-50 204.9 393 36.6
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.0e-49 203.0 216 53.2
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 2.7e-49 202.6 296 43.2
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 9.2e-42 177.6 400 35.0
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 1.2e-36 160.6 302 34.1
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.2e-35 156.4 172 52.9
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 6.4e-35 154.8 151 55.0
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 6.4e-35 154.8 125 65.6
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.4e-34 153.7 121 65.3
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.6e-32 144.4 122 56.6
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-30 140.2 82 76.8
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.2e-28 134.0 775 22.6
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 4.4e-28 132.1 75 84.0
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 5.8e-28 131.7 172 45.3
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.4e-26 127.1 117 58.1
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 2.4e-26 126.3 284 33.8
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 7.8e-25 121.3 140 50.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-24 120.9 95 64.2
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 9.6e-23 114.4 985 22.3
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.6e-22 112.5 267 32.2
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 8.1e-22 111.3 105 56.2
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-20 107.5 81 64.2
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.6e-20 106.3 81 61.7
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.9e-20 104.4 103 48.5
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-16 94.0 57 77.2
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.3e-16 93.2 72 61.1
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 8.7e-16 91.3 98 55.1
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 1.5e-15 90.5 98 55.1
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 4.8e-14 85.5 83 54.2
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 6.4e-11 75.1 91 49.5
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 6.4e-11 75.1 46 76.1
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 8.4e-11 74.7 134 43.3
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.9e-10 73.6 37 86.5
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 3.2e-10 72.8 49 77.6
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 3.5e-09 69.3 64 48.4
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.3e-08 66.6 68 50.0
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 5.1e-08 65.5 63 58.7
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 8.7e-08 64.7 52 67.3
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 8.7e-08 64.7 34 82.4
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 3.3e-07 62.8 54 55.6
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 9.6e-07 61.2 44 63.6
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-06 60.8 41 65.9
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.3e-06 60.8 43 67.4
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 2.8e-06 59.7 51 60.8
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 3.7e-06 59.3 40 62.5


User provided reference genes

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