Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G045320 Cucumis sativus L. HOM05D001473 ORTHO05D019080 2.1e-141 505.8 265 100.0
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.6e-133 479.6 263 96.6
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 8.5e-111 404.1 271 83.8
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 4.0e-92 342.0 262 74.4
ClCG06G009590 Citrullus lanatus HOM05D001473 ORTHO05D003934 2.2e-74 283.1 285 63.2
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 6.4e-58 228.4 273 58.6
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 3.9e-23 112.8 221 38.5
Cpa.g.sc306.2 Carica papaya HOM05D001473 ORTHO05D003934 6.9e-20 102.1 209 34.9
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 1.7e-18 97.4 266 33.1
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 5.0e-18 95.9 275 32.0
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 1.1e-17 94.7 227 38.3
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 2.5e-17 93.6 206 36.9
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 2.5e-17 93.6 261 33.7
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 5.5e-17 92.4 270 31.5
Nitab4.5_0018899g0010 Nicotiana tabacum HOM05D001473 ORTHO05D003934 9.4e-17 91.7 108 50.0
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.2e-16 91.3 165 41.8
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.2e-16 91.3 138 43.5
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 1.6e-16 90.9 197 35.0
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 4.6e-16 89.4 175 38.9
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 4.6e-16 89.4 228 31.1
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 6.1e-16 89.0 198 34.3
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 6.1e-16 89.0 197 37.1
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 7.9e-16 88.6 222 31.1
GSVIVG01023526001 Vitis vinifera HOM05D001473 ORTHO05D003934 7.9e-16 88.6 84 56.0
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.0e-15 88.2 214 32.2
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.4e-15 87.8 175 38.3
QL10p043041 Quercus lobata HOM05D001473 ORTHO05D019080 1.4e-15 87.8 91 57.1
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 2.3e-15 87.0 256 31.2
Gohir.A11G247900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.3e-15 87.0 104 49.0
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 2.3e-15 87.0 193 36.8
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 3.0e-15 86.7 120 43.3
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 3.9e-15 86.3 211 33.6
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 5.1e-15 85.9 104 47.1
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 5.1e-15 85.9 104 47.1
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 5.1e-15 85.9 216 32.9
Sabra19G0030800 Salix brachista HOM05D001473 ORTHO05D019080 6.7e-15 85.5 175 37.7
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 8.8e-15 85.1 130 39.2
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 1.1e-14 84.7 247 32.4
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 1.5e-14 84.3 84 56.0
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.5e-14 84.3 100 49.0
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 1.5e-14 84.3 228 34.6
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 2.5e-14 83.6 168 37.5
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 2.5e-14 83.6 130 39.2
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 3.3e-14 83.2 274 32.1
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 3.3e-14 83.2 94 48.9
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 5.7e-14 82.4 207 32.4
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.7e-14 82.4 200 32.0
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 5.7e-14 82.4 204 35.3
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 9.7e-14 81.6 76 55.3
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 9.7e-14 81.6 189 33.9
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.7e-14 81.6 200 31.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.7e-14 81.6 199 31.7
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 9.7e-14 81.6 84 53.6
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 1.3e-13 81.3 200 31.5
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.7e-13 80.9 197 32.0
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 1.7e-13 80.9 79 53.2
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 1.7e-13 80.9 219 33.8
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 2.2e-13 80.5 193 35.2
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 2.8e-13 80.1 148 38.5
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 3.7e-13 79.7 225 33.3
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 4.8e-13 79.3 87 51.7
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 6.3e-13 79.0 160 34.4
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 6.3e-13 79.0 160 34.4
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 6.3e-13 79.0 258 31.8
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.3e-13 79.0 200 31.0
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 8.2e-13 78.6 90 46.7
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 8.2e-13 78.6 190 31.1
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 1.4e-12 77.8 243 33.7
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 2.4e-12 77.0 278 30.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.4e-12 77.0 250 28.4
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 3.1e-12 76.6 278 29.9
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 3.1e-12 76.6 94 50.0
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 3.1e-12 76.6 175 34.9
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 4.1e-12 76.3 77 53.2
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 6.9e-12 75.5 77 51.9
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 2.0e-11 73.9 186 32.8
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 3.4e-11 73.2 258 27.5
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 3.4e-11 73.2 258 31.0
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.3e-10 71.2 206 31.1
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 2.2e-10 70.5 143 37.8
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 2.2e-10 70.5 77 51.9
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 2.2e-10 70.5 218 32.6
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 2.2e-10 70.5 225 28.0
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 3.8e-10 69.7 255 32.2
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 3.8e-10 69.7 94 46.8
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 3.8e-10 69.7 76 50.0
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 8.5e-10 68.6 258 29.5
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 1.1e-09 68.2 88 45.5
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 1.4e-09 67.8 188 30.9
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.4e-09 67.8 214 31.8
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 3.2e-09 66.6 94 46.8
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 3.2e-09 66.6 246 29.3
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 3.2e-09 66.6 181 27.1
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 5.5e-09 65.9 166 33.1
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 5.5e-09 65.9 211 31.8
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 9.4e-09 65.1 78 46.2
Peaxi162Scf00304g00075 Petunia axillaris HOM05D001473 ORTHO05D003934 2.1e-08 63.9 66 54.5
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 7.9e-08 62.0 146 32.9
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 1.0e-07 61.6 124 36.3
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.0e-07 61.6 89 43.8
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.4e-07 61.2 126 34.9
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.8e-07 60.8 225 27.1
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 1.8e-07 60.8 66 50.0
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 2.3e-07 60.5 89 43.8
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 3.0e-07 60.1 89 43.8
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 3.9e-07 59.7 209 28.7
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 3.9e-07 59.7 57 59.6
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 5.1e-07 59.3 89 42.7
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 5.1e-07 59.3 89 46.1
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 5.1e-07 59.3 133 35.3
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 6.7e-07 58.9 97 42.3
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 6.7e-07 58.9 89 42.7
HPP92_023312 Vanilla planifolia HOM05D001473 ORTHO05D003934 6.7e-07 58.9 78 47.4
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 8.8e-07 58.5 87 40.2
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 8.8e-07 58.5 91 45.1
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 8.8e-07 58.5 180 30.6
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 1.1e-06 58.2 147 32.7
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 1.5e-06 57.8 89 43.8
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 1.5e-06 57.8 66 48.5
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 2.0e-06 57.4 80 46.2
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 2.0e-06 57.4 80 46.2
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 2.6e-06 57.0 97 42.3
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 2.6e-06 57.0 97 42.3
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 3.3e-06 56.6 64 46.9
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 4.4e-06 56.2 118 33.9
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 5.7e-06 55.8 60 53.3
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 5.7e-06 55.8 140 32.1
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 7.4e-06 55.5 89 42.7
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 7.4e-06 55.5 89 42.7


User provided reference genes

Program Settings