Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044350 Cucumis sativus L. HOM05D002653 ORTHO05D002623 2.9e-57 224.9 110 100.0
ClCG03G010440 Citrullus lanatus HOM05D002653 ORTHO05D002623 6.6e-25 117.5 81 77.8
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 1.5e-24 116.3 58 100.0
Sed0013773 Sechium edule HOM05D002653 ORTHO05D002623 2.8e-23 112.1 58 96.6
GSVIVG01019371001 Vitis vinifera HOM05D002653 ORTHO05D002623 8.9e-22 107.1 58 87.9
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 3.4e-21 105.1 58 86.2
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 4.4e-21 104.8 58 86.2
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 5.8e-21 104.4 58 87.9
CiPaw.06G000200 Carya illinoinensis HOM05D002653 ORTHO05D002623 5.8e-21 104.4 58 87.9
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 9.9e-21 103.6 58 84.5
Ciclev10012577m.g Citrus clementina HOM05D002653 ORTHO05D002623 9.9e-21 103.6 58 87.9
Cc11_g00310 Coffea canephora HOM05D002653 ORTHO05D002623 9.9e-21 103.6 57 86.0
Solyc11g045140.1 Solanum lycopersicum HOM05D002653 ORTHO05D002623 9.9e-21 103.6 58 84.5
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 9.9e-21 103.6 58 84.5
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.3e-20 103.2 58 84.5
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.3e-20 103.2 58 84.5
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 2.9e-20 102.1 58 84.5
Nitab4.5_0004202g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.9e-20 102.1 58 82.8
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 2.9e-20 102.1 58 82.8
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 2.9e-20 102.1 58 84.5
Eucgr.K01358 Eucalyptus grandis HOM05D002653 ORTHO05D002623 3.8e-20 101.7 58 84.5
Nitab4.5_0006025g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.8e-20 101.7 58 82.8
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 3.8e-20 101.7 58 84.5
HPP92_001397 Vanilla planifolia HOM05D002653 ORTHO05D002623 3.8e-20 101.7 83 65.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 4.9e-20 101.3 58 81.0
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 4.9e-20 101.3 58 82.8
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 4.9e-20 101.3 57 86.0
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 4.9e-20 101.3 58 82.8
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 4.9e-20 101.3 58 86.2
vmacro03484 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 4.9e-20 101.3 58 82.8
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 82.8
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 82.8
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 82.8
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 82.8
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 82.8
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 82.8
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 81.0
Migut.L00841 Erythranthe guttata HOM05D002653 ORTHO05D002623 6.4e-20 100.9 58 81.0
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 8.4e-20 100.5 58 84.5
Nitab4.5_0004950g0030 Nicotiana tabacum HOM05D002653 ORTHO05D002623 8.4e-20 100.5 59 79.7
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 8.4e-20 100.5 58 81.0
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 1.4e-19 99.8 58 79.3
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 1.4e-19 99.8 57 84.2
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 1.4e-19 99.8 58 79.3
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.9e-19 99.4 58 81.0
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.9e-19 99.4 58 84.5
Hund04713 Selenicereus undatus HOM05D002653 ORTHO05D002623 3.2e-19 98.6 57 82.5
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 4.1e-19 98.2 58 77.6
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 4.1e-19 98.2 58 77.6
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 7.1e-19 97.4 58 79.3
Nitab4.5_0020732g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 7.1e-19 97.4 58 77.6
HPP92_001359 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.1e-18 95.9 57 82.5
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 1.0e-17 93.6 57 77.2
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.0e-17 93.6 57 77.2
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.3e-17 93.2 58 74.1
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 2.3e-17 92.4 58 75.9
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 77.6
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 77.6
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 77.6
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 77.6
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 77.6
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 77.6
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 3.9e-17 91.7 58 72.4
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 6.6e-17 90.9 61 73.8
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 6.6e-17 90.9 58 82.8
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 6.6e-17 90.9 58 82.8
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 8.7e-17 90.5 58 82.8
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 1.1e-16 90.1 57 80.7
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 1.5e-16 89.7 58 81.0
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 1.5e-16 89.7 58 74.1
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.5e-16 89.7 58 81.0
Phvul.002G328604 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.5e-16 89.7 58 81.0
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 2.5e-16 89.0 58 81.0
Psat2g178200 Pisum sativum HOM05D002653 ORTHO05D002623 2.5e-16 89.0 58 81.0
arahy.Tifrunner.gnm1.ann1.G9A448 Arachis hypogaea HOM05D002653 ORTHO05D002623 4.3e-16 88.2 58 81.0
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 5.6e-16 87.8 58 79.3
Psat5g290960 Pisum sativum HOM05D000001 ORTHO05D001705 7.3e-16 87.4 58 79.3
VMungo0251G2657 Vigna mungo HOM05D002653 ORTHO05D002623 4.7e-15 84.7 71 66.2
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 6.2e-15 84.3 57 68.4
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 6.2e-15 84.3 57 68.4
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.1e-14 83.6 58 67.2
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 3.1e-14 82.0 58 63.8
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 5.2e-14 81.3 58 60.3
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 5.2e-14 81.3 58 63.8
COL.COLO4_33574 Corchorus olitorius HOM05D002653 ORTHO05D002623 6.9e-14 80.9 58 62.1
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 6.9e-14 80.9 58 62.1
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 6.9e-14 80.9 58 62.1
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 6.9e-14 80.9 58 62.1
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 1.2e-13 80.1 61 67.2
CBR_g4651 Chara braunii HOM05D002653 ORTHO05D002623 5.8e-13 77.8 58 63.8
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 9.9e-13 77.0 58 67.2
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.2e-12 75.9 58 62.1
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 2.9e-12 75.5 58 65.5
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.4e-11 73.2 58 65.5
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 3.2e-11 72.0 77 49.4
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 3.2e-11 72.0 61 60.7
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 2.7e-10 68.9 60 66.7
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 7.8e-10 67.4 58 55.2
Cre17.g727600 Chlamydomonas reinhardtii HOM05D002653 ORTHO05D002623 3.3e-08 62.0 58 55.2
MCO01G574 Micromonas commoda HOM05D002653 ORTHO05D002623 1.1e-06 57.0 58 44.8
unitig_8.g3109 Utricularia gibba HOM05D002653 ORTHO05D002623 1.4e-06 56.6 32 75.0
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 1.8e-06 56.2 35 71.4
CSS0044031 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D014543 2.4e-06 55.8 32 75.0


User provided reference genes

Program Settings