Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 1.9e-283 978.4 468 100.0
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 2.2e-258 895.2 471 91.1
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 8.8e-236 820.1 468 84.2
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 2.1e-205 719.2 470 77.9
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 8.3e-194 680.6 471 69.0
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 8.6e-191 670.6 471 67.5
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 6.2e-189 664.5 472 66.5
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 6.0e-184 647.9 471 65.0
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.2e-181 640.2 472 65.0
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 2.1e-181 639.4 468 65.4
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 4.4e-179 631.7 473 63.6
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 4.2e-177 625.2 477 64.6
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 4.6e-176 621.7 470 65.3
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.9e-175 618.6 470 64.9
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 2.5e-174 615.9 483 61.9
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.3e-173 613.6 475 64.4
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 6.9e-172 607.8 476 63.0
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.5e-171 606.7 468 63.0
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 2.0e-171 606.3 469 62.5
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 9.9e-171 604.0 468 62.8
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 4.2e-169 598.6 471 61.6
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 3.5e-168 595.5 467 62.3
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 4.6e-168 595.1 469 61.6
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 4.3e-166 588.6 473 59.8
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 7.3e-166 587.8 499 60.9
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 1.6e-165 586.6 473 59.6
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 1.1e-164 583.9 524 55.2
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 2.4e-164 582.8 496 58.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 4.0e-164 582.0 460 63.3
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.6e-163 579.3 473 60.3
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 6.0e-160 568.2 473 57.9
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.0e-159 567.4 479 58.0
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.0e-159 567.4 473 60.0
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.1e-157 559.7 474 58.6
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 3.7e-157 558.9 473 58.6
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 6.2e-157 558.1 474 55.7
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 4.0e-156 555.4 471 59.4
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 6.9e-156 554.7 486 56.2
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 2.0e-155 553.1 473 57.7
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.9e-154 549.3 454 59.9
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.4e-153 547.0 461 57.3
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 2.7e-152 542.7 529 52.9
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.0e-151 540.8 480 56.2
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 2.3e-151 539.7 472 56.4
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 6.7e-151 538.1 469 57.6
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 1.1e-150 537.3 470 55.3
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 2.4e-148 529.6 470 54.5
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 7.6e-147 524.6 496 56.2
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 7.1e-145 518.1 468 55.3
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 6.7e-143 511.5 472 54.0
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.7e-142 508.4 471 54.1
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 8.2e-141 504.6 368 65.2
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.1e-140 504.2 559 49.4
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 1.1e-140 504.2 468 53.2
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 3.1e-140 502.7 388 63.1
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.0e-139 500.0 508 51.2
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.9e-137 493.4 471 51.0
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 2.7e-136 489.6 466 53.6
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 6.1e-136 488.4 466 51.1
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.0e-135 486.1 467 51.2
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 3.0e-135 486.1 478 52.1
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 3.9e-135 485.7 470 50.0
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 3.3e-134 482.6 469 49.9
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.3e-133 480.7 471 50.5
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 6.3e-133 478.4 386 62.4
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 1.8e-132 476.9 389 57.8
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.8e-132 476.9 385 61.0
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 5.3e-132 475.3 471 49.7
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 6.9e-132 474.9 467 52.5
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.2e-131 474.2 476 49.4
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 2.6e-131 473.0 477 48.6
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.1e-129 467.6 518 49.2
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.4e-129 467.2 476 51.5
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 6.1e-128 461.8 485 50.9
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 2.3e-127 459.9 510 45.9
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 5.7e-126 455.3 469 47.8
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.7e-125 453.8 516 45.3
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.1e-124 451.1 433 54.3
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.0e-123 446.8 508 47.6
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 1.8e-119 433.7 473 48.2
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 8.8e-119 431.4 459 47.9
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 5.7e-118 428.7 463 48.8
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 9.7e-118 427.9 501 47.3
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 1.7e-114 417.2 476 46.2
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 4.7e-112 409.1 476 45.8
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 3.1e-108 396.4 330 57.0
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 6.5e-106 388.7 325 56.6
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 3.7e-101 372.9 471 41.8
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 4.1e-100 369.4 307 58.6
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 9.8e-94 348.2 256 64.1
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 7.0e-92 342.0 283 59.4
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 5.6e-89 332.4 289 58.8
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.2e-88 331.3 285 58.6
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 2.8e-88 330.1 485 36.7
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 2.2e-85 320.5 276 58.0
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 2.7e-83 313.5 326 50.6
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 4.7e-80 302.8 294 55.8
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 7.6e-70 268.9 509 34.8
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 2.9e-69 266.9 208 59.1
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.2e-62 245.0 157 66.2
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 9.9e-62 241.9 224 55.8
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 9.9e-62 241.9 189 63.0
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.6e-59 234.6 168 64.3
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.5e-57 228.0 187 58.3
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 9.6e-57 225.3 186 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 1.6e-56 224.6 454 32.8
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 3.3e-41 173.7 161 55.9
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-37 159.1 342 32.2
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.9e-33 147.9 191 41.9
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 3.3e-33 147.1 132 53.8
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 4.8e-24 116.7 132 43.2
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 2.5e-20 104.4 91 53.8
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 7.9e-19 99.4 85 58.8
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 2.0e-17 94.7 154 39.0
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.5e-17 94.4 90 51.1
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 9.7e-17 92.4 275 27.3
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.8e-16 90.9 53 69.8
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 5.3e-15 86.7 99 44.4
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 3.7e-08 63.9 53 54.7
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 3.1e-07 60.8 53 52.8
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 3.1e-07 60.8 56 46.4


User provided reference genes

Program Settings