Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 0.0e+00 1281.5 662 100.0
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 0.0e+00 1245.0 662 96.8
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 0.0e+00 1173.3 664 92.6
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 0.0e+00 1132.5 663 87.9
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 9.1e-271 936.8 667 71.4
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 7.7e-270 933.7 667 72.1
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 5.0e-269 931.0 655 73.7
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.6e-267 926.0 663 71.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 4.7e-267 924.5 655 72.8
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.0e-266 923.3 660 72.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.0e-266 923.3 657 73.2
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.2e-266 921.0 663 71.5
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.5e-265 919.5 666 71.2
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.5e-265 919.5 660 71.7
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.4e-265 917.9 658 71.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.7e-264 916.0 655 71.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 3.7e-264 914.8 676 71.0
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 6.3e-264 914.1 664 71.7
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.1e-263 913.3 660 71.4
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.4e-263 912.9 656 71.5
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 7.0e-263 910.6 661 71.1
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.2e-262 909.8 662 71.1
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.6e-262 909.4 655 72.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 5.9e-262 907.5 651 71.7
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 7.7e-262 907.1 660 70.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.7e-261 906.0 667 70.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 8.6e-261 903.7 662 70.1
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.5e-260 902.9 667 70.0
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.9e-260 902.5 657 70.2
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 4.2e-260 901.4 659 70.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.6e-259 899.4 665 69.8
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 3.6e-259 898.3 653 70.0
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.0e-258 896.7 659 69.8
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 5.2e-258 894.4 659 69.7
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.2e-257 893.3 660 71.2
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.5e-257 892.9 653 69.8
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.4e-255 885.6 667 69.1
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.6e-254 882.9 663 70.3
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 2.0e-254 882.5 658 68.8
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 5.9e-254 880.9 657 69.4
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.0e-253 880.2 693 67.4
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.3e-253 879.8 657 69.4
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 5.0e-253 877.9 665 68.1
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 6.6e-253 877.5 654 69.1
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.1e-252 876.7 657 68.8
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 5.6e-252 874.4 661 69.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.6e-252 874.4 657 68.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 7.3e-252 874.0 653 68.5
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 7.3e-252 874.0 654 68.5
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 5.2e-250 867.8 657 68.5
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 6.8e-250 867.5 665 67.5
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.0e-249 865.9 654 69.0
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.0e-249 865.9 663 67.3
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 2.6e-249 865.5 657 68.8
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 9.8e-249 863.6 661 67.6
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.7e-248 862.8 660 68.0
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 6.4e-248 860.9 652 67.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 8.3e-248 860.5 666 67.4
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 9.2e-247 857.1 692 65.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.6e-246 856.3 656 68.3
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.7e-246 855.5 692 65.5
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 3.0e-245 852.0 652 67.9
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.5e-244 849.7 647 67.7
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 3.6e-243 845.1 657 66.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.4e-242 843.2 663 67.0
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 5.2e-242 841.3 654 66.8
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 4.9e-240 834.7 613 71.5
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.9e-236 822.8 657 65.0
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 6.2e-235 817.8 590 72.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 8.1e-235 817.4 691 64.7
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 3.1e-234 815.5 657 64.7
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.2e-234 814.7 658 64.6
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 6.8e-234 814.3 658 65.2
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.3e-232 810.1 649 64.9
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.4e-231 805.8 727 61.3
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 5.4e-231 804.7 643 66.4
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 4.6e-230 801.6 677 64.7
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.0e-229 800.4 604 69.2
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 8.1e-227 790.8 652 64.1
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.1e-226 790.4 620 66.8
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 4.0e-226 788.5 656 64.6
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.4e-223 779.2 584 69.3
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.1e-218 762.3 595 67.7
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.3e-213 746.9 657 60.7
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 6.9e-210 734.6 871 49.6
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 9.0e-210 734.2 654 61.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 7.6e-209 731.1 681 58.9
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.3e-205 720.3 686 56.1
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.9e-191 673.3 663 55.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.6e-190 668.7 848 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.0e-184 651.0 659 54.0
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.5e-180 637.1 508 65.0
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.3e-179 631.7 486 67.9
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.4e-178 630.6 574 59.8
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 3.5e-169 599.4 476 65.8
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 8.0e-166 588.2 574 56.4
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 3.8e-160 569.3 493 62.5
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.7e-155 553.9 605 53.6
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.6e-144 515.0 436 61.5
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 3.5e-129 466.5 430 57.9
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.0e-112 411.8 462 49.6
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 9.3e-106 388.7 345 59.1
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 9.6e-79 298.9 433 42.5
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 2.8e-78 297.4 249 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.5e-76 291.6 314 49.4
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 6.5e-75 286.2 201 73.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.0e-72 278.9 205 70.2
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.3e-63 247.3 181 68.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.7e-62 245.0 170 69.4
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 5.3e-61 240.0 287 51.6
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 8.5e-59 232.6 374 39.8
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.7e-56 223.0 250 52.8
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.8e-46 190.3 139 70.5
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.6e-39 167.9 170 57.6
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-37 162.2 427 30.2
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.2e-36 159.1 145 58.6
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.7e-35 155.2 138 62.3
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 2.2e-35 154.8 103 72.8
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.9e-34 151.8 94 78.7
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.9e-34 151.8 92 78.3
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 2.0e-31 141.7 93 74.2
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 5.7e-31 140.2 89 74.2
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.7e-28 131.3 185 42.7
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 2.5e-26 124.8 79 77.2
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 9.5e-26 122.9 98 62.2
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.8e-24 118.6 178 39.3
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 5.2e-24 117.1 83 69.9
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 5.2e-24 117.1 173 42.2
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.3e-22 112.5 159 45.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 3.7e-22 110.9 96 64.6
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 3.5e-20 104.4 97 58.8
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.0e-19 101.3 169 37.9
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.9e-18 98.6 90 58.9
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.1e-17 95.1 55 83.6
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 6.8e-16 90.1 66 65.2
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.0e-15 88.6 71 62.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.4e-13 82.4 61 67.2
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-12 78.6 62 61.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.0e-11 76.3 50 68.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.0e-11 76.3 50 68.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.9e-10 72.0 50 66.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 2.1e-09 68.6 94 51.1
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.3e-08 65.1 65 43.1


User provided reference genes

Program Settings