Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 2.7e-111 405.2 190 100.0
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 7.7e-106 387.1 190 94.7
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 9.4e-104 380.2 209 88.0
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 1.9e-88 329.3 186 80.1
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 6.1e-87 324.3 186 78.5
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 8.0e-87 323.9 187 79.1
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 3.1e-86 322.0 187 78.6
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 2.6e-85 318.9 189 78.3
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 2.6e-85 318.9 189 78.3
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 1.3e-84 316.6 186 78.0
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.7e-84 315.1 184 77.7
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 6.4e-84 314.3 186 74.2
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 6.4e-84 314.3 188 76.1
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 6.4e-84 314.3 186 79.0
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.1e-83 313.5 184 77.2
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 2.4e-83 312.4 185 76.8
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 7.0e-83 310.8 185 75.1
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 7.0e-83 310.8 186 75.8
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 7.0e-83 310.8 186 75.3
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 7.0e-83 310.8 185 76.2
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 7.0e-83 310.8 186 77.4
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 3.5e-82 308.5 187 77.0
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 3.5e-82 308.5 187 76.5
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 4.6e-82 308.1 186 76.3
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 4.6e-82 308.1 189 75.7
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.6e-82 308.1 189 77.2
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.6e-82 308.1 189 77.2
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 4.6e-82 308.1 189 77.2
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 6.0e-82 307.8 189 73.5
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 6.0e-82 307.8 184 75.5
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 6.0e-82 307.8 184 75.5
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 6.0e-82 307.8 188 76.6
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 6.0e-82 307.8 189 77.2
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.0e-81 307.0 189 77.2
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 2.3e-81 305.8 185 74.1
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 3.9e-81 305.1 186 74.7
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.1e-80 303.5 187 74.9
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.9e-80 302.8 186 73.1
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 2.5e-80 302.4 150 90.7
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 3.3e-80 302.0 184 74.5
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.3e-80 302.0 184 74.5
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 4.3e-80 301.6 189 74.1
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.2e-79 300.1 191 73.3
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 1.2e-79 300.1 189 74.1
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-79 300.1 184 73.9
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 1.2e-79 300.1 186 74.2
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 2.1e-79 299.3 189 73.0
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.1e-79 299.3 186 74.2
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 3.6e-79 298.5 183 73.8
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 8.1e-79 297.4 186 74.2
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 8.1e-79 297.4 185 72.4
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 1.1e-78 297.0 186 72.0
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.8e-78 296.2 188 71.8
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.1e-78 295.4 184 71.7
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 5.2e-78 294.7 185 71.9
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 8.9e-78 293.9 185 73.0
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.5e-77 293.1 188 75.0
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.5e-77 293.1 186 70.4
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 2.6e-77 292.4 217 66.8
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 3.4e-77 292.0 184 71.7
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 3.4e-77 292.0 186 72.6
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 5.8e-77 291.2 184 73.4
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 7.5e-77 290.8 186 72.0
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 7.5e-77 290.8 186 71.5
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 9.8e-77 290.4 185 72.4
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 1.3e-76 290.0 186 72.0
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.3e-76 290.0 188 70.2
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 2.9e-76 288.9 186 72.0
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 6.4e-76 287.7 183 72.1
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 6.4e-76 287.7 186 72.6
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 8.3e-76 287.3 185 71.9
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 8.3e-76 287.3 186 71.0
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 1.1e-75 287.0 186 71.5
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 1.4e-75 286.6 185 71.9
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 3.2e-75 285.4 185 68.6
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 1.6e-74 283.1 186 69.9
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.1e-74 282.7 186 69.4
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 2.1e-74 282.7 184 70.7
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 2.7e-74 282.3 187 70.6
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 6.0e-74 281.2 186 69.4
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 6.0e-74 281.2 189 70.9
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 7.8e-74 280.8 185 69.7
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 1.0e-73 280.4 186 69.4
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.0e-73 280.4 184 70.1
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 1.7e-73 279.6 186 68.8
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 1.7e-73 279.6 186 68.8
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 3.3e-72 275.4 187 68.4
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 4.3e-72 275.0 186 68.3
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 5.6e-72 274.6 224 58.9
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 8.9e-70 267.3 189 66.1
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.2e-69 266.9 189 66.1
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 5.8e-69 264.6 187 68.4
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 1.3e-68 263.5 185 62.2
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.3e-68 263.5 187 67.4
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.2e-68 262.7 186 67.7
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.9e-68 261.5 186 64.5
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.4e-67 259.2 185 67.6
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 9.2e-67 257.3 186 61.8
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 2.1e-66 256.1 186 62.9
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.5e-66 255.4 145 79.3
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.3e-65 253.4 186 62.9
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 1.7e-65 253.1 189 61.4
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 4.7e-63 245.0 187 63.6
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 4.7e-63 245.0 184 66.8
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 5.2e-62 241.5 187 62.0
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 8.9e-62 240.7 184 62.0
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.2e-61 240.4 187 61.0
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 7.6e-61 237.7 186 62.9
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 9.9e-61 237.3 184 60.9
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 1.1e-59 233.8 185 61.6
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.9e-59 233.0 183 61.7
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.3e-57 226.9 188 60.1
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.7e-57 226.5 182 59.3
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.7e-57 226.5 187 58.3
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.5e-56 222.6 179 63.7
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 5.3e-54 214.9 185 58.9
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 6.9e-54 214.5 191 53.9
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.5e-53 213.4 132 73.5
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 5.4e-51 204.9 187 54.5
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 1.3e-36 157.1 110 64.5
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 8.2e-31 137.9 84 75.0
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 2.4e-30 136.3 82 78.0
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 7.6e-29 131.3 110 59.1
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 7.2e-27 124.8 99 62.6
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.0e-21 106.7 118 49.2
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.2e-20 103.2 95 52.6
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.2e-10 70.9 78 46.2
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 2.2e-07 60.1 187 26.2


User provided reference genes

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