Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.4e-228 794.3 397 100.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.7e-206 721.1 401 91.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 9.0e-173 610.5 391 77.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 3.4e-172 608.6 540 63.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.9e-146 523.1 406 67.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.7e-144 514.6 350 71.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.5e-143 513.5 402 65.9
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.3e-143 511.9 348 72.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 2.8e-142 509.2 387 65.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.8e-142 508.4 401 66.3
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 4.8e-142 508.4 373 67.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.1e-141 507.3 355 70.4
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 9.1e-141 504.2 411 62.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.5e-140 501.9 356 68.3
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 7.7e-140 501.1 343 69.4
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.0e-139 500.7 349 71.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.3e-139 500.4 407 63.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.7e-139 500.0 336 71.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.2e-139 499.6 348 69.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 6.5e-139 498.0 349 69.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 8.5e-139 497.7 339 68.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.1e-138 497.3 403 63.8
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.5e-138 496.1 401 63.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 4.2e-138 495.4 344 71.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.7e-137 491.9 342 71.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 4.7e-137 491.9 409 62.8
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-136 490.0 330 72.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.9e-136 488.8 405 62.7
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.7e-135 485.0 356 67.1
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.7e-135 485.0 401 62.6
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.7e-134 483.4 403 61.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.7e-134 483.4 348 68.7
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.2e-134 483.0 392 63.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 6.3e-134 481.5 418 61.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.1e-133 479.2 417 61.4
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 7.0e-133 478.0 313 75.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 4.5e-132 475.3 339 67.0
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 4.5e-132 475.3 395 61.5
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.9e-132 474.9 382 63.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.9e-132 474.9 343 67.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.0e-131 474.2 396 61.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.2e-131 473.0 318 72.6
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.9e-131 472.6 408 63.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 5.0e-131 471.9 424 59.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 6.5e-131 471.5 318 71.7
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 6.5e-131 471.5 324 70.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 6.5e-131 471.5 325 71.1
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 8.5e-131 471.1 364 65.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.1e-130 470.7 348 67.0
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.9e-130 469.9 320 69.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.5e-130 469.5 346 67.1
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.2e-130 469.2 399 62.4
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.2e-130 469.2 375 63.7
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 4.2e-130 468.8 401 60.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.2e-130 468.8 397 59.2
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.2e-130 468.8 318 70.4
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 5.5e-130 468.4 352 64.5
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.2e-130 468.0 341 67.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 7.2e-130 468.0 361 66.8
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.6e-129 466.8 373 60.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.6e-129 466.8 335 67.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.7e-129 466.1 316 71.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.6e-129 465.7 369 65.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 4.7e-129 465.3 352 66.5
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 6.1e-129 464.9 364 64.8
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.0e-129 464.5 409 60.9
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.4e-128 463.8 395 59.7
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.4e-128 463.8 318 70.8
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.8e-128 463.4 426 58.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.0e-128 462.6 360 66.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.7e-128 461.5 395 58.7
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-127 460.7 373 59.8
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.1e-127 460.7 329 66.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 4.4e-127 458.8 395 61.3
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-126 456.4 438 56.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-126 456.1 325 66.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.8e-126 456.1 325 66.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 8.2e-126 454.5 325 66.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.1e-125 454.1 408 61.0
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.4e-125 453.0 325 66.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 7.0e-125 451.4 374 61.0
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 9.1e-125 451.1 325 66.5
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.1e-125 451.1 324 68.2
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.6e-124 450.3 376 58.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.6e-124 449.5 332 68.1
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.0e-123 447.6 353 63.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.7e-123 446.8 403 60.0
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.8e-123 445.7 346 64.7
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-123 445.3 409 58.7
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.0e-123 445.3 310 67.4
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-122 443.7 399 58.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-122 443.4 402 59.7
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 3.2e-122 442.6 343 64.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.4e-122 441.0 312 69.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 9.4e-122 441.0 324 66.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.2e-121 440.7 361 64.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.6e-121 440.3 397 59.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.4e-120 437.2 349 61.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 3.0e-120 436.0 320 67.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 5.2e-120 435.3 349 62.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 6.8e-120 434.9 354 60.5
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.2e-119 434.1 471 52.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.4e-119 432.2 378 61.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.7e-119 431.8 307 66.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.7e-118 430.3 373 56.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-118 429.9 344 62.8
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-117 427.6 373 56.6
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.1e-117 425.6 361 62.0
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-114 417.5 321 65.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.5e-114 415.2 306 67.3
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.1e-113 413.3 376 59.6
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-112 411.0 398 56.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.5e-111 407.1 405 58.3
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-110 403.7 379 57.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-109 400.6 310 63.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 8.9e-104 381.3 278 66.9
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 5.7e-103 378.6 330 57.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.1e-101 374.4 408 53.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.0e-100 370.2 412 51.5
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 5.2e-96 355.5 316 60.8
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 8.9e-96 354.8 314 54.5
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.4e-93 347.4 231 72.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.6e-92 342.4 315 55.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-89 334.0 309 57.3
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 8.0e-89 331.6 239 65.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.4e-87 326.2 213 73.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.3e-86 324.3 286 56.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.5e-84 316.2 210 74.3
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.3e-82 308.5 320 53.8
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 6.2e-81 305.4 210 69.0
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-79 300.8 201 70.6
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 8.3e-78 295.0 271 53.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-77 294.7 345 50.4
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.0e-75 288.1 405 44.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.7e-73 279.3 201 70.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.5e-71 274.2 180 72.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.6e-71 273.5 210 65.7
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.9e-69 267.3 187 69.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.2e-69 266.2 406 41.1
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.2e-68 264.6 241 59.8
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 7.8e-68 261.9 321 43.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.9e-61 240.7 318 43.7
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.2e-54 217.2 192 56.8
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 8.4e-54 215.3 181 61.3
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.1e-52 210.7 184 59.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.7e-49 199.9 147 68.7
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.8e-49 199.5 299 41.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.1e-41 174.1 231 41.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.4e-38 162.2 130 60.0
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.2e-36 158.3 318 32.7
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 5.1e-35 152.9 99 71.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.2e-31 141.7 321 34.9
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-31 141.4 155 48.4
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.9e-30 137.1 97 62.9
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 6.5e-30 136.0 320 33.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-29 135.2 189 43.4
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.5e-29 132.9 79 79.7
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.0e-27 127.1 66 87.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.3e-25 121.7 81 67.9
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 6.3e-25 119.4 64 79.7
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 9.1e-24 115.5 102 58.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-22 112.1 59 84.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.7e-22 111.3 143 46.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.2e-21 106.7 62 79.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 3.0e-19 100.5 84 56.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 3.9e-19 100.1 91 56.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 8.8e-19 99.0 92 55.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.5e-18 98.2 150 41.3
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.6e-18 97.4 64 68.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 6.3e-17 92.8 64 64.1
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-16 92.0 74 54.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 9.1e-16 89.0 80 56.2
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 8.0e-12 75.9 50 72.0
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.5e-10 69.3 73 53.4
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-09 67.8 33 93.9
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-08 63.5 46 69.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.0e-07 61.2 33 84.8
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 3.8e-06 57.0 47 55.3


User provided reference genes

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