Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 1.5e-214 749.2 363 100.0
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 1.4e-188 662.9 345 93.3
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 1.9e-153 546.2 345 82.0
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 2.3e-143 512.7 374 71.7
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 1.0e-77 294.7 349 49.0
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 6.5e-77 292.0 344 48.5
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 1.6e-75 287.3 344 49.4
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 2.2e-72 276.9 350 46.3
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 9.0e-71 271.6 356 45.8
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.5e-70 270.8 346 46.2
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 2.0e-70 270.4 345 46.7
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 1.0e-69 268.1 342 47.7
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 5.0e-69 265.8 352 47.2
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.9e-68 263.8 345 46.1
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 4.2e-68 262.7 345 45.5
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.2e-67 261.2 347 45.2
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.6e-67 260.8 366 43.2
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 2.7e-67 260.0 360 43.1
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 3.6e-67 259.6 359 43.7
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 6.1e-67 258.8 367 43.1
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 1.4e-66 257.7 379 41.7
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 1.8e-66 257.3 357 42.3
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 2.3e-66 256.9 350 44.0
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 5.1e-66 255.8 317 48.6
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 1.1e-65 254.6 358 45.3
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 7.4e-65 251.9 346 41.9
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 7.4e-65 251.9 346 44.8
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 9.7e-65 251.5 343 44.9
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 9.7e-65 251.5 388 43.0
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 1.3e-64 251.1 374 42.5
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.2e-64 250.4 375 42.4
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 2.2e-64 250.4 359 44.3
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 2.2e-64 250.4 156 75.0
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 3.7e-64 249.6 397 41.3
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 3.7e-64 249.6 352 42.0
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 4.8e-64 249.2 374 42.0
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 6.3e-64 248.8 352 44.3
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.3e-64 248.8 388 40.5
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 6.3e-64 248.8 359 41.2
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 1.4e-63 247.7 349 44.4
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.4e-63 246.9 372 42.7
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 1.2e-62 244.6 372 42.5
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 1.5e-62 244.2 371 42.0
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 1.5e-62 244.2 366 39.3
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 3.4e-62 243.0 360 42.5
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 3.4e-62 243.0 384 39.8
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 5.9e-62 242.3 147 73.5
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 7.7e-62 241.9 371 41.8
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 2.2e-61 240.4 384 39.8
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 5.0e-61 239.2 344 43.9
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 6.5e-61 238.8 374 40.9
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.5e-61 238.8 386 40.4
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 8.5e-61 238.4 346 44.8
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.1e-60 238.0 371 41.5
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 2.5e-60 236.9 352 41.8
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 3.2e-60 236.5 147 73.5
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 5.5e-60 235.7 346 41.9
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 5.5e-60 235.7 343 41.4
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 9.4e-60 235.0 415 37.1
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 9.4e-60 235.0 274 47.4
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 1.6e-59 234.2 346 43.4
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-59 234.2 356 41.0
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.6e-59 234.2 356 41.0
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 2.1e-59 233.8 346 43.9
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 2.7e-59 233.4 339 41.9
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 3.6e-59 233.0 352 42.6
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 1.0e-58 231.5 357 41.5
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-58 231.1 155 70.3
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.4e-58 231.1 155 70.3
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 1.4e-58 231.1 348 40.8
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 3.0e-58 229.9 153 68.0
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 3.0e-58 229.9 151 70.2
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 3.9e-58 229.6 344 40.4
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 6.7e-58 228.8 359 41.2
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 8.8e-58 228.4 157 66.2
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.6e-57 226.9 155 70.3
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 2.6e-57 226.9 345 41.2
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 7.4e-57 225.3 151 68.2
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 9.7e-57 224.9 155 67.1
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 1.3e-56 224.6 342 41.2
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 1.7e-56 224.2 315 44.8
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.7e-56 224.2 163 65.6
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.2e-56 223.8 321 39.9
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 3.7e-56 223.0 362 39.5
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 3.7e-56 223.0 145 68.3
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 4.8e-56 222.6 155 69.7
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 6.3e-56 222.2 345 41.2
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 8.2e-56 221.9 135 75.6
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 8.2e-56 221.9 147 68.7
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 8.2e-56 221.9 169 63.3
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 1.4e-55 221.1 345 40.9
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.8e-55 220.7 351 39.3
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 5.3e-55 219.2 356 40.4
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 5.3e-55 219.2 359 39.0
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 5.3e-55 219.2 387 38.0
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 3.5e-54 216.5 165 63.0
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 3.5e-54 216.5 350 39.7
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 7.7e-54 215.3 155 64.5
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 1.3e-53 214.5 138 72.5
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 1.3e-53 214.5 186 60.2
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 2.9e-53 213.4 138 69.6
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 5.0e-53 212.6 147 67.3
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 5.0e-53 212.6 184 60.3
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 5.0e-53 212.6 173 60.7
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 6.5e-53 212.2 351 40.2
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 6.5e-53 212.2 347 39.5
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.4e-52 211.1 345 39.4
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.9e-52 210.7 173 58.4
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 3.2e-52 209.9 138 69.6
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 7.2e-52 208.8 153 63.4
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 3.6e-51 206.5 154 63.0
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 1.4e-50 204.5 135 69.6
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 1.1e-49 201.4 354 40.1
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.3e-49 199.9 398 36.2
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 4.4e-49 199.5 189 55.0
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.2e-44 183.3 146 61.6
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 6.1e-43 179.1 160 55.0
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 1.4e-42 177.9 101 82.2
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.6e-41 173.7 379 33.8
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-40 170.2 317 36.9
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 8.3e-40 168.7 308 39.3
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 8.3e-40 168.7 91 83.5
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 9.1e-39 165.2 154 48.7
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 5.9e-38 162.5 196 43.9
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 8.5e-37 158.7 137 51.8
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 1.2e-35 154.8 155 47.7
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 4.0e-34 149.8 109 66.1
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 4.4e-33 146.4 113 61.1
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 1.4e-31 141.4 135 46.7
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.1e-31 140.2 90 71.1
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.1e-31 140.2 90 71.1
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 5.4e-31 139.4 145 48.3
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 2.0e-30 137.5 163 42.9
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.5e-30 136.3 90 71.1
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.3e-29 134.8 274 35.8
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 3.3e-28 130.2 93 63.4
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 7.2e-28 129.0 93 62.4
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 2.1e-27 127.5 148 44.6
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 3.6e-27 126.7 125 52.0
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 9.8e-25 118.6 187 35.3
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 3.7e-24 116.7 89 62.9
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 6.3e-24 115.9 133 45.9
Gohir.D13G241450 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.9e-21 107.1 56 82.1
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 4.7e-19 99.8 84 51.2
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.8e-18 95.9 302 29.5
Eucgr.C01059 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.2e-17 95.1 68 64.7
Prupe.1G103400 Prunus persica HOM05D002376 ORTHO05D004654 2.6e-17 94.0 48 87.5
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 1.3e-16 91.7 95 52.6
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 1.3e-16 91.7 95 52.6
CiPaw.14G052200 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.7e-16 91.3 48 83.3
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 2.2e-16 90.9 82 54.9
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 2.2e-16 90.9 82 54.9
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 4.9e-16 89.7 93 49.5
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 2.4e-15 87.4 74 56.8
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 1.6e-14 84.7 46 84.8
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 2.7e-14 84.0 61 67.2
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 3.5e-14 83.6 61 60.7
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 4.6e-14 83.2 57 66.7
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 4.6e-14 83.2 57 66.7
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 6.0e-14 82.8 44 86.4
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.3e-13 81.6 46 80.4
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 2.5e-12 77.4 44 77.3
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 3.3e-12 77.0 69 53.6
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 5.6e-12 76.3 46 73.9
FAN26G2163 Fragaria x ananassa HOM05D002376 ORTHO05D004654 9.5e-12 75.5 48 64.6
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 1.7e-08 64.7 98 32.7
Cpa.g.sc2.244 Carica papaya HOM05D002376 ORTHO05D004654 2.9e-08 63.9 46 63.0
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 6.4e-08 62.8 55 43.6
FvH4_7g05780 Fragaria vesca HOM05D014655 ORTHO05D045933 3.2e-07 60.5 49 55.1
CDE12G0746 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 5.4e-07 59.7 47 53.2
FAN19G3001 Fragaria x ananassa HOM05D014655 ORTHO05D045933 3.5e-06 57.0 41 58.5
BcaC06g30638 Brassica carinata HOM05D002376 ORTHO05D004654 7.8e-06 55.8 87 44.8


User provided reference genes

Program Settings