Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 8.6e-218 760.0 371 100.0
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.9e-204 715.7 373 94.1
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.5e-195 684.9 374 89.6
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.1e-185 653.3 356 89.6
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.9e-180 636.0 375 83.5
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.6e-161 570.5 374 76.2
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.6e-161 570.5 374 76.2
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 6.7e-138 494.6 370 64.9
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 2.5e-137 492.7 363 64.5
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 2.8e-136 489.2 370 65.9
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 3.7e-136 488.8 337 67.7
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 2.4e-135 486.1 370 63.8
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.3e-135 485.0 368 64.1
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.2e-134 483.8 351 65.0
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.5e-134 483.4 362 65.5
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 5.9e-134 481.5 369 64.0
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 5.0e-133 478.4 352 67.3
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.5e-133 478.0 355 64.8
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 1.1e-132 477.2 322 69.3
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.4e-132 476.9 355 64.5
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.2e-132 475.7 376 62.5
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.2e-132 475.7 369 63.1
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 4.2e-132 475.3 352 66.8
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 7.2e-132 474.6 312 71.5
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.1e-131 473.0 333 67.3
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 2.7e-131 472.6 368 62.8
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 4.7e-131 471.9 370 64.1
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.1e-129 467.2 363 62.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.5e-129 466.8 325 67.4
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.5e-129 466.8 351 62.1
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 2.2e-128 463.0 380 59.5
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 1.1e-127 460.7 373 61.7
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 7.0e-127 458.0 369 62.9
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 3.5e-126 455.7 338 65.4
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 5.9e-126 454.9 367 60.5
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 7.7e-126 454.5 338 65.1
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.7e-125 453.4 340 64.7
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.9e-124 449.9 367 61.6
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 4.2e-124 448.7 361 63.2
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 5.5e-124 448.4 359 63.0
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 5.5e-124 448.4 332 64.8
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 5.5e-124 448.4 338 64.8
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.4e-124 447.6 351 62.7
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 2.1e-123 446.4 379 58.3
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 2.7e-123 446.0 316 65.2
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 4.7e-123 445.3 340 64.7
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 6.1e-123 444.9 371 59.3
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 6.1e-123 444.9 393 58.5
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 8.0e-123 444.5 322 65.8
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.0e-122 444.1 395 57.5
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 4.0e-122 442.2 371 60.6
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 8.8e-122 441.0 330 61.8
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 2.0e-121 439.9 375 57.3
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 2.6e-121 439.5 393 55.7
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 3.3e-121 439.1 370 60.0
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 4.4e-121 438.7 364 60.2
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 1.7e-120 436.8 371 59.8
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 2.2e-120 436.4 370 57.8
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 2.2e-120 436.4 362 59.9
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.8e-120 436.0 338 63.0
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.4e-119 433.7 317 61.8
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 1.4e-119 433.7 366 59.6
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.4e-119 433.0 383 58.7
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 3.1e-119 432.6 367 61.6
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 7.0e-119 431.4 349 60.7
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 9.1e-119 431.0 364 59.6
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.2e-118 430.6 336 61.3
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.5e-118 429.1 384 57.6
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 5.9e-118 428.3 365 58.1
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 1.7e-117 426.8 366 59.6
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 2.2e-117 426.4 332 62.3
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.9e-117 426.0 317 63.7
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 8.5e-117 424.5 359 57.4
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 1.9e-116 423.3 365 58.1
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.5e-116 422.9 352 57.4
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 2.5e-116 422.9 322 61.2
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 4.2e-116 422.2 336 60.7
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.2e-115 420.6 355 58.0
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 4.7e-115 418.7 322 61.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 8.0e-115 417.9 336 61.6
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.3e-114 416.4 362 57.5
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 2.3e-114 416.4 297 67.7
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 6.8e-114 414.8 334 60.5
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 6.8e-114 414.8 381 55.1
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 8.8e-114 414.5 367 58.0
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 8.8e-114 414.5 322 60.9
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 2.4e-111 406.4 348 58.0
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 5.4e-111 405.2 273 69.2
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 5.9e-110 401.7 362 56.6
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.2e-109 399.8 360 55.3
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.9e-109 399.4 329 56.8
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.0e-106 391.0 357 54.9
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.4e-106 390.6 348 58.0
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.3e-106 389.8 276 67.0
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 5.7e-105 385.2 365 54.5
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 1.3e-104 384.0 312 60.6
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.7e-104 382.5 271 66.4
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 6.3e-104 381.7 333 58.6
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.4e-103 379.8 316 60.4
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.6e-102 377.1 276 63.0
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 3.5e-102 375.9 338 57.1
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 4.3e-100 369.0 296 59.1
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 8.9e-98 361.3 365 51.8
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 3.0e-93 346.3 322 55.6
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 1.4e-90 337.4 301 53.5
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 5.8e-89 332.0 292 53.8
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.1e-87 327.8 330 52.4
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 3.2e-87 326.2 317 52.7
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.3e-85 320.9 382 45.8
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 4.4e-81 305.8 211 67.8
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 4.6e-78 295.8 352 47.4
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 8.1e-75 285.0 295 48.5
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 9.2e-71 271.6 213 61.0
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.1e-66 258.1 255 51.8
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 5.8e-65 252.3 294 43.5
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.9e-64 250.0 286 48.3
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.4e-63 246.9 287 40.1
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 4.6e-62 242.7 288 44.8
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 3.9e-53 213.0 296 41.6
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.1e-46 190.7 127 69.3
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 9.0e-34 148.7 146 48.6
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 2.2e-32 144.1 83 77.1
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 4.2e-31 139.8 88 72.7
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.2e-30 138.3 211 38.4
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.1e-22 110.9 70 67.1
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 7.4e-12 75.9 75 50.7
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.4e-10 70.9 70 52.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 9.1e-10 68.9 42 66.7
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.1e-07 62.0 70 40.0


User provided reference genes

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