Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 3.5e-141 505.0 259 100.0
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.8e-126 456.1 268 90.3
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 3.5e-117 425.2 269 83.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.5e-107 392.5 203 98.0
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.9e-103 379.0 273 74.4
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 3.2e-102 375.6 264 75.8
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.6e-101 371.7 262 76.0
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 6.0e-101 371.3 262 76.0
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.9e-100 368.6 270 74.1
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 4.3e-99 365.2 263 74.5
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 7.3e-99 364.4 261 75.1
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 7.3e-99 364.4 268 75.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.2e-98 363.6 222 82.9
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.2e-98 363.6 266 73.7
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 8.1e-98 360.9 270 72.6
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 6.8e-97 357.8 283 70.7
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 6.8e-97 357.8 272 71.7
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.2e-96 357.1 273 71.8
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.5e-96 356.7 261 72.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.4e-96 355.5 268 71.3
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 4.4e-96 355.1 215 84.2
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 5.8e-96 354.8 234 77.4
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 2.2e-95 352.8 215 82.8
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 2.9e-95 352.4 274 71.5
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 3.8e-95 352.1 270 72.2
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 3.8e-95 352.1 238 77.7
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 6.4e-95 351.3 251 75.3
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 9.2e-94 347.4 228 78.5
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.2e-93 347.1 239 74.9
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.6e-93 346.7 228 78.1
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 2.1e-93 346.3 245 73.5
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.7e-93 345.9 239 74.1
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 6.0e-93 344.7 218 81.7
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 6.0e-93 344.7 262 72.1
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 7.8e-93 344.4 211 82.5
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 2.3e-92 342.8 262 71.0
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 2.3e-92 342.8 220 79.1
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.0e-92 342.4 232 77.2
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 3.0e-92 342.4 205 83.4
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 3.9e-92 342.0 220 78.2
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 3.9e-92 342.0 257 72.0
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 8.7e-92 340.9 223 77.1
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.5e-91 340.1 230 77.4
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 4.3e-91 338.6 250 73.2
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 5.6e-91 338.2 258 70.2
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.6e-91 338.2 238 72.7
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 7.3e-91 337.8 251 71.7
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 9.6e-91 337.4 224 76.8
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.6e-91 337.4 222 76.1
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.6e-90 336.7 237 74.7
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.6e-90 336.7 239 74.1
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.6e-90 336.7 217 79.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 2.1e-90 336.3 216 78.2
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.8e-90 335.9 242 72.3
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 2.8e-90 335.9 215 80.0
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 3.6e-90 335.5 256 69.1
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.6e-90 335.5 261 70.5
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 4.7e-90 335.1 211 80.6
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.4e-89 332.8 271 65.7
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 2.4e-89 332.8 207 82.1
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.1e-89 332.4 224 75.4
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 3.1e-89 332.4 217 77.4
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.0e-89 332.0 234 72.6
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 4.0e-89 332.0 222 75.2
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 5.3e-89 331.6 217 77.9
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.5e-88 330.1 217 77.4
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 2.0e-88 329.7 217 77.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.0e-88 329.7 253 68.4
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.6e-88 329.3 217 77.0
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 7.6e-88 327.8 198 82.8
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.7e-87 326.6 214 77.1
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.2e-87 326.2 217 76.5
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 2.9e-87 325.9 264 67.8
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.9e-87 325.9 217 75.1
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 4.9e-87 325.1 268 66.4
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 8.4e-87 324.3 243 70.8
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.1e-86 323.9 208 77.4
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.9e-86 323.2 274 64.6
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 3.2e-86 322.4 235 72.8
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 3.2e-86 322.4 226 71.7
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 5.4e-86 321.6 251 69.7
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 7.1e-86 321.2 272 65.1
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 7.1e-86 321.2 213 77.9
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 9.3e-86 320.9 222 75.2
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.2e-85 320.5 249 69.5
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.6e-85 320.1 243 67.5
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 2.1e-85 319.7 226 71.2
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.7e-85 319.3 198 80.8
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 4.6e-85 318.5 242 69.4
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 6.0e-85 318.2 247 70.4
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.0e-84 317.4 216 75.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.0e-84 317.4 272 64.7
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.7e-84 316.6 219 71.7
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 3.9e-84 315.5 228 71.1
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.5e-83 313.5 177 85.9
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.9e-83 313.2 187 82.4
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.9e-83 313.2 212 76.4
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 7.3e-83 311.2 203 76.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 9.6e-83 310.8 212 74.1
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.6e-82 310.1 206 73.3
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 1.8e-81 306.6 211 76.3
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.4e-81 306.2 213 73.7
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 3.1e-81 305.8 223 72.6
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 3.1e-81 305.8 216 73.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.9e-79 299.3 224 68.3
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-76 290.4 178 81.5
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 3.3e-75 285.8 214 66.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 9.9e-72 274.2 214 63.6
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.8e-68 263.5 205 68.8
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.5e-67 260.4 180 70.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.2e-61 240.7 174 63.8
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.5e-59 233.8 181 62.4
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 6.9e-49 198.4 114 86.0
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 2.0e-48 196.8 127 78.0
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.4e-46 190.7 149 66.4
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.3e-42 177.6 219 44.7
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 7.2e-38 161.8 182 47.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.4e-25 120.9 187 36.9
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.6e-21 106.3 75 74.7
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 5.7e-19 99.0 75 69.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.1e-17 94.7 56 78.6
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 5.2e-12 75.9 61 62.3
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 9.2e-09 65.1 224 25.9
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 7.8e-08 62.0 173 25.4
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 1.3e-07 61.2 173 27.2
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 2.3e-07 60.5 176 27.3
AUR62022518 Chenopodium quinoa HOM05D002933 ORTHO05D009221 3.9e-07 59.7 252 23.4
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 5.0e-07 59.3 224 24.1
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 8.6e-07 58.5 194 27.8
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 8.6e-07 58.5 201 24.9
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 1.1e-06 58.2 173 25.4
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 1.5e-06 57.8 251 26.7
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 2.5e-06 57.0 240 23.3
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 2.5e-06 57.0 215 23.7
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 4.3e-06 56.2 173 24.3
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 4.3e-06 56.2 176 26.1
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 4.3e-06 56.2 175 26.9
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 4.3e-06 56.2 188 26.1
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 4.3e-06 56.2 110 40.0
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 5.6e-06 55.8 251 23.1
CAN.G104.6 Capsicum annuum HOM05D002933 ORTHO05D009221 5.6e-06 55.8 173 24.9
PGSC0003DMG400026667 Solanum tuberosum HOM05D002933 ORTHO05D009221 5.6e-06 55.8 173 24.9
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 7.3e-06 55.5 250 23.6
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 7.3e-06 55.5 175 26.9
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 7.3e-06 55.5 242 24.4
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 7.3e-06 55.5 204 24.5
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 9.5e-06 55.1 174 25.9


User provided reference genes

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