Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.1e-182 641.7 334 100.0
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 3.0e-161 572.0 327 91.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.8e-148 528.5 336 83.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.9e-140 502.3 330 79.1
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 8.5e-116 421.0 313 71.6
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 8.5e-116 421.0 335 68.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.6e-114 416.8 323 70.6
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.7e-111 406.8 310 70.6
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.1e-110 404.1 330 66.4
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.1e-110 402.5 330 67.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 9.1e-110 401.0 300 70.0
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.6e-109 400.2 331 66.8
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 7.7e-109 397.9 329 68.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.7e-108 396.7 331 66.2
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.7e-108 396.7 330 65.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 3.8e-108 395.6 316 69.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.5e-108 394.8 304 68.4
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 8.5e-108 394.4 296 70.3
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.5e-107 393.7 327 64.8
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.5e-107 393.7 319 64.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.2e-107 392.5 331 66.2
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.7e-106 389.4 292 71.2
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 6.1e-106 388.3 309 71.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 8.0e-106 387.9 337 63.8
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.0e-105 386.0 333 64.3
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.0e-105 386.0 321 66.0
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 8.8e-105 384.4 341 64.5
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 3.3e-104 382.5 309 64.4
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 4.4e-104 382.1 329 61.7
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 9.7e-104 380.9 312 67.0
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 9.7e-104 380.9 298 66.4
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.3e-103 380.6 328 63.7
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.7e-103 379.0 326 67.2
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.8e-102 376.7 321 63.6
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.4e-102 376.3 298 66.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.2e-101 374.0 304 66.4
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 3.5e-101 372.5 288 66.7
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 5.9e-101 371.7 325 64.9
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 7.7e-101 371.3 333 64.6
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 5.0e-100 368.6 275 72.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.0e-100 368.6 310 64.2
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 5.0e-100 368.6 316 63.0
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 6.5e-100 368.2 305 67.9
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.5e-99 367.1 290 68.6
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.9e-99 366.7 333 63.1
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.1e-98 363.2 330 60.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 2.7e-98 362.8 329 63.2
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.7e-98 362.8 300 63.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.6e-98 362.5 314 64.3
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.0e-97 360.9 297 63.6
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.0e-97 359.4 278 69.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.5e-96 357.1 285 66.0
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 4.4e-96 355.5 293 65.2
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.3e-95 354.0 277 70.4
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.8e-95 352.8 301 63.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.8e-95 352.8 254 69.7
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.4e-94 350.5 280 63.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.4e-94 350.5 330 63.9
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.1e-94 349.4 263 69.2
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.0e-93 346.7 223 77.1
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 7.7e-93 344.7 219 77.2
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.0e-92 344.4 234 72.2
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.7e-92 343.6 290 64.1
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.2e-92 343.2 304 63.2
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 8.5e-92 341.3 240 72.5
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 7.2e-91 338.2 301 60.8
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 7.2e-91 338.2 267 68.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 7.2e-91 338.2 329 59.9
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.1e-90 336.7 322 59.9
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 3.6e-90 335.9 234 71.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 8.0e-90 334.7 357 55.2
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.0e-89 334.3 324 59.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 5.2e-89 332.0 324 59.9
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 5.2e-89 332.0 329 59.0
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 6.8e-89 331.6 287 59.6
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 5.7e-88 328.6 331 57.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.7e-87 327.0 331 57.4
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.2e-87 326.6 323 57.3
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 8.3e-87 324.7 261 66.7
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.1e-86 324.3 297 61.3
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 3.1e-86 322.8 305 62.0
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 4.1e-86 322.4 323 56.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.5e-85 319.3 290 63.4
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 3.5e-85 319.3 292 62.3
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 3.5e-85 319.3 328 58.2
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 5.9e-85 318.5 318 58.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 7.7e-85 318.2 316 60.8
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 7.7e-85 318.2 307 57.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 7.7e-85 318.2 322 58.4
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 2.3e-84 316.6 317 60.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 5.0e-84 315.5 317 60.3
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 8.6e-84 314.7 328 57.9
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 8.6e-84 314.7 328 57.9
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.5e-83 313.9 252 67.5
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.9e-83 313.5 328 57.3
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 5.6e-83 312.0 294 59.5
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 9.5e-83 311.2 325 58.5
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 9.5e-83 311.2 325 58.5
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.1e-82 310.1 305 57.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.7e-82 308.9 334 54.8
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.5e-80 303.9 320 55.3
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 4.1e-78 295.8 331 55.0
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.0e-77 293.5 259 59.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.7e-77 293.1 309 57.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.9e-77 292.0 233 62.7
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 8.6e-76 288.1 323 54.8
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 9.5e-75 284.6 306 54.9
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 7.0e-70 268.5 279 53.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.0e-69 266.9 192 69.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.7e-68 263.8 326 51.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.6e-66 256.1 266 53.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.1e-59 234.6 284 49.3
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 4.7e-58 229.2 133 85.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 6.8e-57 225.3 332 42.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.6e-56 223.4 357 46.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.8e-55 219.5 271 44.6
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.6e-50 204.1 266 45.1
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 6.4e-47 192.2 124 71.8
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.3e-44 184.5 120 73.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.7e-44 184.1 177 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.3e-39 167.9 244 41.8
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.3e-35 153.3 90 80.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 3.3e-35 153.3 92 78.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.1e-33 148.3 177 43.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-33 146.0 272 33.5
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 9.0e-25 118.6 120 57.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-24 116.7 240 30.8
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 5.8e-24 115.9 167 45.5
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.2e-23 114.0 200 34.5
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.2e-22 109.8 65 78.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.6e-16 90.5 120 44.2
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.8e-12 77.8 233 27.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.7e-12 75.9 203 27.6
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.8e-10 70.5 63 58.7
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 3.4e-08 63.5 38 76.3
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 4.2e-06 56.6 96 27.1


User provided reference genes

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