Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 4.3e-49 197.6 94 100.0
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 6.5e-21 104.0 105 55.2
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 6.5e-21 104.0 105 55.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.9e-20 102.4 105 53.3
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 5.1e-18 94.4 119 47.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 1.2e-14 83.2 95 49.5
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.5e-14 82.8 96 49.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 2.0e-14 82.4 94 50.0
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 3.4e-14 81.6 94 47.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 3.4e-14 81.6 95 49.5
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 4.5e-14 81.3 120 44.2
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 4.5e-14 81.3 84 53.6
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 4.5e-14 81.3 121 43.8
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 4.5e-14 81.3 83 53.0
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 5.9e-14 80.9 121 43.0
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 7.7e-14 80.5 109 47.7
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 7.7e-14 80.5 95 48.4
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 7.7e-14 80.5 95 48.4
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.3e-13 79.7 93 48.4
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.3e-13 79.7 93 48.4
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 1.3e-13 79.7 93 48.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 1.7e-13 79.3 94 47.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 2.2e-13 79.0 100 45.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 2.2e-13 79.0 108 46.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 2.2e-13 79.0 83 50.6
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 2.9e-13 78.6 89 48.3
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 3.8e-13 78.2 91 49.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 5.0e-13 77.8 95 46.3
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 5.0e-13 77.8 94 47.9
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 5.0e-13 77.8 87 48.3
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 6.5e-13 77.4 93 48.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 8.5e-13 77.0 91 48.4
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.5e-13 77.0 86 48.8
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 1.4e-12 76.3 104 45.2
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 1.4e-12 76.3 95 46.3
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 1.9e-12 75.9 100 44.0
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.9e-12 75.9 95 46.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-12 75.9 79 51.9
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-12 75.9 79 51.9
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 4.2e-12 74.7 82 48.8
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.2e-12 74.7 100 44.0
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 5.5e-12 74.3 80 51.2
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 7.2e-12 73.9 78 52.6
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 7.2e-12 73.9 98 48.0
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 9.4e-12 73.6 94 46.8
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 1.2e-11 73.2 96 44.8
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 1.6e-11 72.8 87 47.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 1.6e-11 72.8 95 44.2
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 2.1e-11 72.4 74 52.7
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 2.7e-11 72.0 95 46.3
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 3.6e-11 71.6 85 50.6
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 4.6e-11 71.2 91 45.1
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 4.6e-11 71.2 79 49.4
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 4.6e-11 71.2 106 43.4
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 6.1e-11 70.9 95 45.3
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 6.1e-11 70.9 107 43.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 7.9e-11 70.5 87 46.0
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 7.9e-11 70.5 87 46.0
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 7.9e-11 70.5 87 46.0
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 7.9e-11 70.5 82 50.0
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 7.9e-11 70.5 82 50.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 7.9e-11 70.5 95 45.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 1.0e-10 70.1 95 45.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.0e-10 70.1 106 42.5
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.0e-10 70.1 106 42.5
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 1.0e-10 70.1 78 47.4
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.0e-10 70.1 87 46.0
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 1.8e-10 69.3 95 45.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 1.8e-10 69.3 79 49.4
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 1.8e-10 69.3 95 44.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.8e-10 69.3 73 53.4
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 2.3e-10 68.9 89 44.9
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 2.3e-10 68.9 95 44.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 3.0e-10 68.6 95 44.2
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 5.1e-10 67.8 85 43.5
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 5.1e-10 67.8 82 47.6
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 6.7e-10 67.4 95 43.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 8.8e-10 67.0 95 42.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.1e-09 66.6 107 42.1
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 1.1e-09 66.6 108 38.0
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 1.1e-09 66.6 107 41.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 1.5e-09 66.2 96 44.8
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 1.5e-09 66.2 113 41.6
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.5e-09 66.2 95 43.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 2.5e-09 65.5 107 42.1
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 2.5e-09 65.5 90 43.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 3.3e-09 65.1 84 41.7
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 3.3e-09 65.1 84 41.7
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 4.3e-09 64.7 83 41.0
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 5.7e-09 64.3 84 44.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 5.7e-09 64.3 84 40.5
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 5.7e-09 64.3 84 40.5
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 7.4e-09 63.9 83 41.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 7.4e-09 63.9 83 41.0
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 7.4e-09 63.9 75 44.0
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 7.4e-09 63.9 78 50.0
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 9.7e-09 63.5 84 41.7
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 1.7e-08 62.8 79 40.5
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 1.7e-08 62.8 91 39.6
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 1.7e-08 62.8 94 43.6
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 2.2e-08 62.4 107 41.1
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 3.7e-08 61.6 84 44.0
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 6.3e-08 60.8 84 40.5
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 6.3e-08 60.8 106 41.5
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 1.1e-07 60.1 83 39.8
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.8e-07 59.3 78 42.3
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.1e-07 57.0 81 45.7
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 7.7e-06 53.9 79 43.0


User provided reference genes

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